View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_high_22 (Length: 326)
Name: NF17627_high_22
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_high_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 27 - 326
Target Start/End: Complemental strand, 29958817 - 29958518
Alignment:
| Q |
27 |
tcagcaaaagatgatgtcctttctggcaaaggccatgaatagtccgggctttatggctcaattttcacagcagcagaatgaaagtaatagacatgttacc |
126 |
Q |
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| T |
29958817 |
tcagcaacagatgatgtcctttctggcaaaggccatgaatagtccgggctttatggctcaattttcacagcagcagaatgaaagtaatagacatgttacc |
29958718 |
T |
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| Q |
127 |
gcaggtaaaaagaggcggctccaggggcaggaagaagatagtttagacaccaagaatccccataatcctcttgatggacgtgttgttaagtaccagcctt |
226 |
Q |
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| T |
29958717 |
gcaggtaaaaagaggcggctccaggggcaggaagaagatagtttagccaccaagaatccccataatcctcttgatgggcgtgttgttaagtaccagcctt |
29958618 |
T |
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| Q |
227 |
cgattaatgaggctgcaaaaacattatttaaccagatgttgcaaatgaacagttctgcaagggtggattcctccatcaagaaccttgatgcattccttat |
326 |
Q |
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| T |
29958617 |
cgattaatgaggctgcaaaaacattatttaaccagatgttgcaaatgaacagttctgcaagggtggattcctccatcaagaaccttgatgcattccttat |
29958518 |
T |
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