View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17627_high_25 (Length: 312)
Name: NF17627_high_25
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_high_25 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0491 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 1430 - 1139
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1430 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaa |
1331 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1330 |
gaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
1231 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1230 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 6317 - 6026
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6317 |
aagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaa |
6218 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||| |||||| |
|
|
| T |
6217 |
gaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatatcgtgaag |
6118 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
6117 |
ctttatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgt |
6026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 18739551 - 18739260
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18739551 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaa |
18739452 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739451 |
gaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
18739352 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739351 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
18739260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 18744515 - 18744224
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18744515 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaa |
18744416 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744415 |
gaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
18744316 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744315 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
18744224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 18749476 - 18749185
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18749476 |
aagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaa |
18749377 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
18749376 |
gaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatattgtgaag |
18749277 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
18749276 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgt |
18749185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 18723824 - 18723533
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18723824 |
aagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaa |
18723725 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||| |||||| |
|
|
| T |
18723724 |
gaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatatagtgaag |
18723625 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
18723624 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgatgt |
18723533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 18733045 - 18732996
Alignment:
| Q |
133 |
cttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaag |
182 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
18733045 |
cttttgattagagttttagaaatgaagtgagaatattatcagaaataaag |
18732996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1595906 - 1596197
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1595906 |
aagcaacagaagactttgacatgagatattgcattggaacgggagcatatggaagtgtttacagggcacaattaccaagtggaaaggttgttgccttaaa |
1596005 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596006 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
1596105 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1596106 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgatgt |
1596197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1088500 - 1088791
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1088500 |
aagcaacagaggactttgacatgagatattgcattggaacaggagcatatagaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaa |
1088599 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1088600 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcacaaacatattgtgaag |
1088699 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088700 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1088791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 1541780 - 1541489
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1541780 |
aagcaacagaagacttcgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggaaaggttgttgccttaaa |
1541681 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541680 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
1541581 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
1541580 |
ctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgtatgatgatgt |
1541489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 1604237 - 1604527
Alignment:
| Q |
2 |
agcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaag |
101 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1604237 |
agcaacggaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaag |
1604336 |
T |
|
| Q |
102 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagc |
201 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604337 |
aaacttcacggctatgaagaagaggttccatcttttgatgagagtttcaaaaatgaagtgaaaatattatcagaaataaagcaccgacatattgtgaagc |
1604436 |
T |
|
| Q |
202 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604437 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1604527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1105849 - 1106140
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1105849 |
aagcaacggaagactttgacatgagatattgcattggaactggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaa |
1105948 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1105949 |
gaaacttcacggctatgaagtcgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
1106048 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
1106049 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctatcttgtatgatgatgt |
1106140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 1557724 - 1557433
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||||||| ||||| |
|
|
| T |
1557724 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggtaatgttgttgctttaaa |
1557625 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
1557624 |
gaaacttcacggctatgaagctgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcacaaacatatcgtgaag |
1557525 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1557524 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1557433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 1551014 - 1550723
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
1551014 |
aagcaacagaagactttgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgtcgccttaaa |
1550915 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1550914 |
gaaacttcatggctatgaagcagacgttccatcttttgatgagagtttcagaaatgaagtgagaatattgacagaaataaagcaccgacatattgtgaag |
1550815 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1550814 |
cttcatggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagaggaagcttgttcactgtcttgtatgacgatgt |
1550723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2329540 - 2329828
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
2329540 |
aagcaacagaagactttgacattagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttgttgcaataaa |
2329639 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
2329640 |
gaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagatataaagcaccggcatatcgtgaag |
2329739 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatga |
289 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2329740 |
ctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctgtcttgtatgatga |
2329828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2337439 - 2337727
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
2337439 |
aagcaacagaagactttgacattagatattgcattgggacaggagcatatggaagtgtttataaggcacaattaccatgtggaaaagttgttgcaataaa |
2337538 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
2337539 |
gaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgaaaatattatcagatataaagcaccgacatatcgtgaag |
2337638 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatga |
289 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2337639 |
ctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctggcttgtatgatga |
2337727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 2321043 - 2321332
Alignment:
| Q |
2 |
agcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaag |
101 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
2321043 |
agcaacggaagattttgacattagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttgttgccttgaag |
2321142 |
T |
|
| Q |
102 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagc |
201 |
Q |
| |
|
|||||||||||||||||||| ||| | ||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2321143 |
aaacttcacggctatgaagcagagctgccagcttttgatgaaagttttagaaatgaagtgagaatattatcagaaataaagcaccgaaatattgtgaagc |
2321242 |
T |
|
| Q |
202 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatg |
291 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
2321243 |
tttatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagaggaagtttgttctccgtcttgtatgatgatg |
2321332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 2 - 293
Target Start/End: Complemental strand, 3955771 - 3955480
Alignment:
| Q |
2 |
agcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaag |
101 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||| |
|
|
| T |
3955771 |
agcaacaaaagactttgacattaaatattgcattggaaaaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaatttgttgcactaaaa |
3955672 |
T |
|
| Q |
102 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagc |
201 |
Q |
| |
|
|||||||| |||| ||||| ||||| |||||| ||||||| ||||| ||||| ||||||| |||||||||||||||||||||| || |||||||||||| |
|
|
| T |
3955671 |
aaacttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagc |
3955572 |
T |
|
| Q |
202 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgtc |
293 |
Q |
| |
|
|||||||||| || ||||| |||||| | ||||||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
3955571 |
tttatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgttctccgtcttgcatgatgatgtc |
3955480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 9532353 - 9532075
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||||||||||||||| || ||| | ||||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
9532353 |
actttgacattagatattgcatatggacaggagcatatggaagtgtatacaagactcaattaccatgtgacaaagttgtcgccttaaagaaacttcacat |
9532254 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
212 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||||| ||| |||| ||||||||||| | ||||||| ||| | ||||||| |||||||||||||| |
|
|
| T |
9532253 |
ctatgaagcagaggtgccatcttttgatgcgagtttcaaaaatgaagcgagaatattataaaaaataaatcacataaatattgttaagctttatggatta |
9532154 |
T |
|
| Q |
213 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||| | ||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
9532153 |
tgattgtacaaaagaatcatgtttttgatctatcaatacgt-gagaaaggaagtttgttctcgtttttgtatgatgatgt |
9532075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 30792155 - 30792447
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||||||| || |||||||||| ||||||| ||| | ||| ||| | ||| |||||| || ||| | || ||| || |||| || |||||||||||| | |
|
|
| T |
30792155 |
aagcaacataacactttgacattagatattacatcgagacatgaggacatgaaagtgtatacaagactcatttatcatgtggcaaagttgttgccttata |
30792254 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||||||||| ||||||| | | || ||||||||| | ||||||| ||| |||||||||||||||||| ||||||||||| | ||||||| ||| |
|
|
| T |
30792255 |
gaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaatattgttaag |
30792354 |
T |
|
| Q |
201 |
ctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| |||||||||||||||||||| | |||||| |||||| ||||| ||| |||||||||||||| |
|
|
| T |
30792355 |
ctttatagattctgcttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatgatgt |
30792447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 19250257 - 19250547
Alignment:
| Q |
1 |
aagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaa |
100 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||| |||||| |||||| |||||| || ||| | | ||||||| |||| || ||||| || ||||| |
|
|
| T |
19250257 |
aagcaacacaacactttgacattagatattgcatcatgacaggatcatatgaaagtgtatacaagactcgattaccatgtggtaaagttgtcgctttaaa |
19250356 |
T |
|
| Q |
101 |
gaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaag |
200 |
Q |
| |
|
|||| ||||| |||||||| || || || |||||||||| ||||||||||| |||||||||||||||||| | ||||| ||| | ||||||| ||| |
|
|
| T |
19250357 |
gaaatttcacaactatgaagtagatgtgccgtcttttgatgcgagtttcagaattgaagtgagaatattatcatatataaaacacataaatattgttaag |
19250456 |
T |
|
| Q |
201 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || |||||||||||||| |
|
|
| T |
19250457 |
ctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggttttgtatgatgatgt |
19250547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 41669093 - 41668820
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
41669093 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
41668994 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
212 |
Q |
| |
|
||||||||| || || |||||||||||| ||||||||||| ||||||| |||||||| | |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
41668993 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcagaattgaagtgaaaatattataaaaaataaagcagataaatattgttaagctttatggattt |
41668894 |
T |
|
| Q |
213 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
286 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
41668893 |
tgcttgcacaaaagaataatgtttttaatctatcgatacatgaaaaaagaaagtttgttctcagttttgtatga |
41668820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 42978019 - 42977746
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
42978019 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
42977920 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
212 |
Q |
| |
|
||||||||| || || |||||||||||| || |||||||| |||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
42977919 |
ctatgaagcagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
42977820 |
T |
|
| Q |
213 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
286 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
42977819 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatga |
42977746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 54122784 - 54123056
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
54122784 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
54122883 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
212 |
Q |
| |
|
||||||||| || || |||||||||||| |||||||| || |||||||||||||||| | |||||||||| | |||| | ||||||||| ||| |
|
|
| T |
54122884 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcacaattgaagtgagaatattataaaaaataaagcagataaatatctttaagctttatatattt |
54122983 |
T |
|
| Q |
213 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatg |
285 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || ||||||| |
|
|
| T |
54122984 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcagttttgtatg |
54123056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 48712677 - 48712417
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
48712677 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
48712578 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
212 |
Q |
| |
|
|||| |||| || || | |||||||||| || |||||||| |||||||||||||||||| ||||||| || | ||||||| |||||||||||||| |
|
|
| T |
48712577 |
ctattaagcagatgtgtcttcttttgatgcgattttcagaattgaagtgagaatattatcaaaaataaa-cagataaatattgttaagctttatggattt |
48712479 |
T |
|
| Q |
213 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
274 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
48712478 |
tgcttgcacaaaagaatcatattttcaatctatcaatacatgaaaaaagaaagtttgttctc |
48712417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 16880158 - 16880331
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| || ||| |||||||||||||||| || ||| | | ||||||| | | || |||| |||||||||||| ||||| |
|
|
| T |
16880158 |
actttgacattagatattgcatcggcacaagagcatatggaagtgtatacaagactcgattaccatcttgcaaagttgccgccttaaagaaatttcacaa |
16880257 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaa-gtgagaatattatcagaaataaagcac |
185 |
Q |
| |
|
|||||||| | || |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16880258 |
ctatgaagtaaaagtgtcatcttttgatgcgagtttcagaaatgaatgtgagaatattatcagaaataaagcac |
16880331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 31657883 - 31658144
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||| |||||||||| || ||| | |||||| || |||| || |||| ||||||||||||||||| |
|
|
| T |
31657883 |
actttgacattagatattgcatcgtgacataagcacatggaagtgtatacaagactcaattatcatgtggcaaatttgtcaccttaaagaaacttcacaa |
31657982 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
212 |
Q |
| |
|
||| ||| || || |||||||||||| || |||||||| |||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
31657983 |
ctacgaaatagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
31658082 |
T |
|
| Q |
213 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
274 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
31658083 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
31658144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 36620555 - 36620744
Alignment:
| Q |
94 |
ccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatat |
193 |
Q |
| |
|
||||||||||||||||| |||| |||| || || ||||||||||| ||||||||||| |||||||||||||||||| |||||||||| | |||| |
|
|
| T |
36620555 |
ccttaaagaaacttcacaactattaagcagatgt---atcttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatat |
36620651 |
T |
|
| Q |
194 |
tgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
286 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | | || ||| |||||||| || |||||||| |
|
|
| T |
36620652 |
tgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaagagaaagtttgttctcggttttgtatga |
36620744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 8873340 - 8873078
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
8873340 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgcgaccttaaagaaacttcacaa |
8873241 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
212 |
Q |
| |
|
||||||||| || || |||| ||||||| |||||||||| |||||||||||||||| | |||||||||| | ||||| | |||||||||||||| |
|
|
| T |
8873240 |
ctatgaagcagatgtgtcatcgtttgatgccagtttcagaattgaagtgagaatattataaaaaataaagcagataaatattattaagctttatggattt |
8873141 |
T |
|
| Q |
213 |
t-gcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
274 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
8873140 |
ttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
8873078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 286
Target Start/End: Complemental strand, 39102416 - 39102260
Alignment:
| Q |
130 |
catcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaat |
229 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
39102416 |
catcttttgatgcgagttttagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaag |
39102317 |
T |
|
| Q |
230 |
catgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
286 |
Q |
| |
|
||||||||| || |||||||||||| | | || ||| |||||||| || |||||||| |
|
|
| T |
39102316 |
catgtttttaatatatcaatacatgaaaagagaaagtttgttctcggttttgtatga |
39102260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 1257677 - 1257950
Alignment:
| Q |
13 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
112 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||||| |||||| || ||| | |||||| || |||| | ||| ||||||||||||||||| |
|
|
| T |
1257677 |
actttgacattagatattgcatcgtgacataagcatatgaaagtgtatacaagactcaattatcatgtggccaatttgccaccttaaagaaacttcacaa |
1257776 |
T |
|
| Q |
113 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
212 |
Q |
| |
|
|||||||| || || ||| |||||||| ||||||||||| |||||||||||||||||| |||||||||| | ||||||| || ||||||| ||| |
|
|
| T |
1257777 |
atatgaagcagatgtgtcattttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaaactttatgaattt |
1257876 |
T |
|
| Q |
213 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
286 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
1257877 |
tgtttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatga |
1257950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University