View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_high_6 (Length: 409)
Name: NF17627_high_6
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_high_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 76 - 409
Target Start/End: Original strand, 52108778 - 52109108
Alignment:
| Q |
76 |
atcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaatcccgcaattcatcaggaata |
175 |
Q |
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| T |
52108778 |
atcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaatcctgcaattcatcaggaata |
52108877 |
T |
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| Q |
176 |
attcccaaacccttgagataatcgaagacgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgtaacagtaggcatctcgtatt |
275 |
Q |
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| T |
52108878 |
attcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgtaacagtaggcatctcgtatt |
52108977 |
T |
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| Q |
276 |
cgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaattgtttggggatttggaagtggatttggatttaattg |
375 |
Q |
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| T |
52108978 |
ccggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaa---tttggggatttggaagtggatttggatttaattg |
52109074 |
T |
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| Q |
376 |
gtgagaaattagcttagaaacattaacattgcgt |
409 |
Q |
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| T |
52109075 |
gtgagaaattagcttggaaacattaacattgcgt |
52109108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 76 - 340
Target Start/End: Original strand, 44520050 - 44520314
Alignment:
| Q |
76 |
atcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaatcccgcaattcatcaggaata |
175 |
Q |
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| T |
44520050 |
atcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaagctccaaatcctgcaattcatcaggaata |
44520149 |
T |
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| Q |
176 |
attcccaaacccttgagataatcgaagacgatgacccgcgaaacgagtttctctttgcggccttgaatcacaccccatgtaacagtaggcatctcgtatt |
275 |
Q |
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| T |
44520150 |
attcccaaacccttgagataatcgaagatgatgaccctcgaaacgagtttctctttgcgaccttgaatcacaccccatgtaacagtaggcatctcgtatt |
44520249 |
T |
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| Q |
276 |
cgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaatt |
340 |
Q |
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| T |
44520250 |
caggaaatttggaatcttgggttccatagagattgaagaataaaaccctaaaattgtttgaaatt |
44520314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 398
Target Start/End: Original strand, 44520337 - 44520388
Alignment:
| Q |
347 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacat |
398 |
Q |
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| T |
44520337 |
ggatgtggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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