View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17627_high_9 (Length: 401)

Name: NF17627_high_9
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17627_high_9
NF17627_high_9
[»] chr4 (2 HSPs)
chr4 (21-380)||(16988055-16988414)
chr4 (184-279)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (21-380)||(21807540-21807899)
chr2 (35-332)||(20971202-20971497)
chr2 (185-275)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (37-332)||(26465292-26465587)
chr5 (77-273)||(23884074-23884270)
chr5 (190-341)||(23958779-23958930)
chr5 (80-116)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (36-372)||(34068262-34068598)
chr6 (169-294)||(20850027-20850152)
chr6 (167-291)||(14617738-14617862)
chr6 (161-239)||(28561533-28561611)
chr6 (100-341)||(12302377-12302618)
[»] chr7 (5 HSPs)
chr7 (175-275)||(3004921-3005021)
chr7 (157-266)||(8853841-8853950)
chr7 (184-233)||(18477565-18477614)
chr7 (167-231)||(19666209-19666273)
chr7 (175-269)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (175-275)||(37737401-37737501)
chr1 (178-281)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (167-320)||(8273-8426)
[»] chr8 (2 HSPs)
chr8 (97-269)||(18551164-18551336)
chr8 (220-278)||(2998101-2998159)
[»] chr3 (3 HSPs)
chr3 (124-233)||(44667108-44667217)
chr3 (103-326)||(18963220-18963443)
chr3 (328-380)||(4643364-4643416)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 21 - 380
Target Start/End: Original strand, 16988055 - 16988414
Alignment:
Q  21 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988055 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 16988154  T
Q  121 ctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 220  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988155 ctagctggaaattctatctctgaatttcaagatattaaagccattatgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 16988254  T
Q  221 tagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 320  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16988255 tagaggttgctcattcctcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttc 16988354  T
Q  321 tacaccatctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 380  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16988355 tacaccatctgacccttcatgcaaattacacactgattctagttctccttatgatgatgt 16988414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 279
Target Start/End: Original strand, 35088802 - 35088897
Alignment:
Q  184 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgat 279  Q
    |||||||||||||| ||  | |||||||| |||||| | ||||||||||||||   |  ||| || ||||| ||||||||||||||||| ||||||    
T  35088802 atcaaggatcttggtcaactcaaatacttccttggtattgaggttgctcattccaaagcaggcatttctctctgtcaaagaaagtattgccttgat 35088897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 21 - 380
Target Start/End: Complemental strand, 21807899 - 21807540
Alignment:
Q  21 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21807899 acatcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtatgttgatgatgtgatc 21807800  T
Q  121 ctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807799 ctagctggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtt 21807700  T
Q  221 tagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 320  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  21807699 tagaggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactaatacatgatttttagcttccaaacctatttc 21807600  T
Q  321 tacaccatctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 380  Q
    ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  21807599 tacgccatctgacccttcctgcaaattacacactgattctagttctccttatgatgatgt 21807540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 332
Target Start/End: Complemental strand, 20971497 - 20971202
Alignment:
Q  35 ttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattc 134  Q
    |||||||||| |||||||||||||||||||| |||||||| | | ||||||||||||  || ||||| |||||||||||||||||  | |  || | |||    
T  20971497 ttcaatctgcatctgatcactctctcttcattaagaagacagatacttcattcacagccttgcttgtttatgttgatgatgtgattattgttggtacttc 20971398  T
Q  135 tatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcat 234  Q
      | ||||| || || || || |||  || |||||||||||| || ||||| |||| |||||| || || ||||| ||||||||| ||||||||||| ||    
T  20971397 actttctgagtttcaggacatcaaaatcaatctgcattcttccttcaagattaaggctcttggtcaattgaaatattttcttggtctagaggttgcttat 20971298  T
Q  235 tcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctga 332  Q
    || ||| |  | ||||||||||| |||||||| || |||||||| |  |  ||||||||| | ||| | ||||| ||||||| |||||||||||||||    
T  20971297 tcatcacagtgcatctctctttgccaaagaaaataatgtcttgacc--tagactgatacatgttttcttgcttcaaaacctgattctacaccatctga 20971202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 23682248 - 23682338
Alignment:
Q  185 tcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtct 275  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | |||| || ||  | ||||||||||||||||||||    
T  23682248 tcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggtatttcattgtgtcaaagaaagtattgtct 23682338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 37 - 332
Target Start/End: Complemental strand, 26465587 - 26465292
Alignment:
Q  37 caatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattcta 136  Q
    |||||| | |||||||| ||||| ||||| ||||||||   | |||||||||||| ||| ||||| |||||||||||||||||| |  | || | |||      
T  26465587 caatctacatctgatcattctcttttcattaagaagacatatacttcattcacagctttgcttgtttatgttgatgatgtgatcatcactggtacttcac 26465488  T
Q  137 tctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattc 236  Q
    |||||||||||||||| || |||||||||||||||||| ||||  | || |||||||||||||| || |||||||||||||||||||| |||||||||||    
T  26465487 tctctgaattccaagacatcaaagccattctgcattctgctttagaaattaaggatcttggccaattgaaatactttcttggtttagaagttgctcattc 26465388  T
Q  237 ttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctga 332  Q
     ||| |||| ||||||||||| |||||||| ||||||||||||||  ||||||||| | ||||| | ||| | ||||||| |||||||||||||||    
T  26465387 ctcacaaggcatctctctttgccaaagaaaatattgtcttgatctcctaactgatataggatttcttgctgcaaaacctgcttctacaccatctga 26465292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 23884270 - 23884074
Alignment:
Q  77 cttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttc 176  Q
    |||||||||||||| |  | ||||||||||| |||||| | || || |||||||| ||  | | |||||| ||  | || |||| |||||| ||   |||    
T  23884270 cttcttcattcacaatacttcttgtgtatgtggatgatatcattcttgcaggaaactcactttatgaatttcagaacatcaaagacattcttcacaattc 23884171  T
Q  177 ttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgt 273  Q
    ||| || ||||| ||||||||||| |||||||| || |||||||||||||| |||||||||  | |||||||||| || || |||||||||||||||    
T  23884170 tttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggtagctcattctaaacaaggaatctcactatgccaaagaaagtattgt 23884074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 341
Target Start/End: Original strand, 23958779 - 23958930
Alignment:
Q  190 gatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctt-tgtcaaagaaagtattgtcttgatcttttaact 288  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||||| |||| || | |||| ||||||||||| ||||| ||||||||| | |||    
T  23958779 gatcttggccaattgaaatacttccttggtttagaggttgctcactcttcacaagggat-tttcttatgtcaaagaaaatattgccttgatcttctgact 23958877  T
Q  289 gatacaagatttttagcttccaaacctgtttctacaccatctgacccttcatg 341  Q
    || ||| | ||  | || ||||||||| |||||||||||| ||| || |||||    
T  23958878 gacacatgtttccttgcatccaaacctctttctacaccatttgatccatcatg 23958930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 23958669 - 23958705
Alignment:
Q  80 cttcattcacagttttacttgtgtatgttgatgatgt 116  Q
    ||||||||||||||||||| || ||||||||||||||    
T  23958669 cttcattcacagttttactggtttatgttgatgatgt 23958705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 36 - 372
Target Start/End: Original strand, 34068262 - 34068598
Alignment:
Q  36 tcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattct 135  Q
    ||||||| |||||||||| ||| | |||| |||||||||  || ||||||| || || ||||| || ||||| |||||||||||  | || ||  | |||    
T  34068262 tcaatctacttctgatcattctttgttcaccaagaagaccactacttcatttactgtgttactagtctatgtggatgatgtgattattgctggtgactct 34068361  T
Q  136 atctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcatt 235  Q
     | |||||| | ||    || ||| ||||| ||||||| |||||||| |||||||| ||||| || || |||||||| ||||| ||||||||||||||||    
T  34068362 ctttctgaacttcactccatcaaatccattttgcattcctcttttaaaatcaaggaccttggtcaattgaaatacttccttggcttagaggttgctcatt 34068461  T
Q  236 cttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctgaccc 335  Q
    ||||  |||| || ||||| ||||| ||||| ||||| |||||| |  ||||||||||  |  || | |||| |||||||||||| || |||||||||||    
T  34068462 cttctgaaggcatttctctatgtcagagaaaatattgccttgatttgctaactgatactggtcttctggcttgcaaacctgtttccactccatctgaccc 34068561  T
Q  336 ttcatgaaaattacacactgattctagttctccttat 372  Q
    ||| || || ||||| | |||||||||| | ||||||    
T  34068562 ttcttgcaagttacataatgattctagtgccccttat 34068598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 20850152 - 20850027
Alignment:
Q  169 cattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagt 268  Q
    |||||||| || || || || |||||||| ||||| || ||||||||||||||| || ||||||| |||||| ||||||| | | | || || |||||||    
T  20850152 cattcttcattcaaaattaaagatcttggtcagttgaagtactttcttggtttaaagtttgctcactcttcacaaggaatatttttgtgccagagaaagt 20850053  T
Q  269 attgtcttgatcttttaactgataca 294  Q
    |||||||||||||| | |||||||||    
T  20850052 attgtcttgatcttctcactgataca 20850027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 14617738 - 14617862
Alignment:
Q  167 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaa 266  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| || |||||||||||||||||||| |||||  |||| || || |||| | | |||||    
T  14617738 tgcattcctctttcaagattaaggacttgggccaattgaaataattccttggtttagaggttgctcactcttctcaaggcatttcacttttttagagaaa 14617837  T
Q  267 gtattgtcttgatcttttaactgat 291  Q
    ||||||||| |||||| | ||||||    
T  14617838 gtattgtctggatcttctcactgat 14617862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 28561533 - 28561611
Alignment:
Q  161 ccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttc 239  Q
    |||| ||||||||||| || ||||| || |||||||| ||||| ||||| |||||||| |||||||| || ||||||||    
T  28561533 ccatcctgcattcttccttcaagattaaagatcttggtcagttgaaatattttcttggattagaggtggcacattcttc 28561611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 341
Target Start/End: Original strand, 12302377 - 12302618
Alignment:
Q  100 gtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggcc 199  Q
    ||||||||| ||||| ||||| | || ||  |||| || |||||||| ||| |||| |||||||| || |||||||| || ||||| || ||||||||      
T  12302377 gtgtatgttaatgatatgatcattgctggtgattccatgtctgaatttcaacatatgaaagccatcctacattcttccttcaagattaaagatcttggtt 12302476  T
Q  200 agttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatt 299  Q
    ||||||| ||||| | |  ||| || ||| | ||||| || |||||||||||  | | |||||| ||||||||  |||||||| | ||||||  | |       
T  12302477 agttaaattacttccatcattttgaagtttcacattcatctaaaggaatctccttgtatcaaaggaagtattgcattgatcttctcactgatctaggtca 12302576  T
Q  300 tttagcttccaaacctgtttctacaccatctgacccttcatg 341  Q
    | |  ||||||||||||||||||| || ||||| ||||||||    
T  12302577 tctgacttccaaacctgtttctactccttctgaaccttcatg 12302618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 3004921 - 3005021
Alignment:
Q  175 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtc 274  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  3004921 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 3005020  T
Q  275 t 275  Q
    |    
T  3005021 t 3005021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 8853841 - 8853950
Alignment:
Q  157 aaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctcttt 256  Q
    |||||||||||||| || || ||||| |||||||||||||| || || || || || ||||| |||||| |||||||||||||  ||||||| |||||||    
T  8853841 aaagccattctgcactcctcctttaaaatcaaggatcttggtcaattgaagtatttccttggattagagattgctcattcttctcaaggaatatctcttt 8853940  T
Q  257 gtcaaagaaa 266  Q
    |||| |||||    
T  8853941 gtcagagaaa 8853950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 18477565 - 18477614
Alignment:
Q  184 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctca 233  Q
    |||||||||||||||||||| ||||  |||||||||||||| ||||||||    
T  18477565 atcaaggatcttggccagttgaaattttttcttggtttagaagttgctca 18477614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 19666209 - 19666273
Alignment:
Q  167 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgct 231  Q
    ||||||| ||||| ||||| |||||  | |||||||| ||||| |||||||||||||||||||||    
T  19666209 tgcattcctctttcaagattaaggacttgggccagttgaaatattttcttggtttagaggttgct 19666273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 269
Target Start/End: Complemental strand, 19813392 - 19813298
Alignment:
Q  175 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagta 269  Q
    ||||| || ||||| |||| | |||| ||||||||||| ||||||||||| ||||||||||||  | |||| || || || || |||||||||||    
T  19813392 tctttcaaaatcaaagatcattgccaattaaaatacttccttggtttagaagttgctcattctgaacaagggatttccctatgccaaagaaagta 19813298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 37737501 - 37737401
Alignment:
Q  175 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtc 274  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  37737501 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 37737402  T
Q  275 t 275  Q
    |    
T  37737401 t 37737401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 13427994 - 13427891
Alignment:
Q  178 tttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttg 277  Q
    |||||||||||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||   || ||||||  | | || |||||||| ||||||||||    
T  13427994 tttaagatcaaggatcttggccagctaaaatattttcttggcatagaggtggcttattctaagaatggaatcagtatatgccaaagaaaatattgtcttg 13427895  T
Q  278 atct 281  Q
    ||||    
T  13427894 atct 13427891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 320
Target Start/End: Original strand, 8273 - 8426
Alignment:
Q  167 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaa 266  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| ||||||||||||||||||||||| |||||  |||| || ||| ||||||| | |||    
T  8273 tgcattcctctttcaagattaaggacttgggccaattgaaatattttcttggtttagaggttgctcactcttctcaaggcatatctgtttgtcagaaaaa 8372  T
Q  267 gtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 320  Q
     |||||||| |||||  | |||||| || |   ||||||||||||||| |||||    
T  8373 atattgtctggatctcctcactgattcaggtcatttagcttccaaaccagtttc 8426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 18551336 - 18551164
Alignment:
Q  97 cttgtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttg 196  Q
    ||||| ||||| |||||| | |||||||||||||||||  | ||||||||  || | || ||| ||||||| |||   ||||| || ||||| |||||||    
T  18551336 cttgtctatgtagatgatatcatcctagcaggaaattcactttctgaatttgaaaacatcaaaaccattcttcataactctttcaaaatcaaagatcttg 18551237  T
Q  197 gccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagta 269  Q
    ||||||| ||||| || ||||||||||| || |||||||||  | |||| || ||| | || |||||||||||    
T  18551236 gccagttgaaatatttccttggtttagaagtagctcattctgaacaagggatatctttatgccaaagaaagta 18551164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 2998101 - 2998159
Alignment:
Q  220 ttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttga 278  Q
    |||||||||||||||||   | |||| |||||| ||| |||||||||||||||||||||    
T  2998101 ttagaggttgctcattccaaagaagggatctctatttctcaaagaaagtattgtcttga 2998159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 44667217 - 44667108
Alignment:
Q  124 gcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttag 223  Q
    |||||||||||| | ||||| |||||| |||| ||| ||||||||||| |||| || |||||||| ||| | || ||||| || || ||||||||| | |    
T  44667217 gcaggaaattctctttctgagttccaacatatcaaatccattctgcatgcttcattcaagatcaaagatttgggacagttgaactattttcttggtcttg 44667118  T
Q  224 aggttgctca 233  Q
    ||||||||||    
T  44667117 aggttgctca 44667108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 326
Target Start/End: Complemental strand, 18963443 - 18963220
Alignment:
Q  103 tatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagt 202  Q
    |||||||||||||||||  | || || ||  |||| |||||||| ||| |||| || |  || |||||||| || || || || || |||||||| ||||    
T  18963443 tatgttgatgatgtgataattgctggtaacactatgtctgaatttcaacatatcaatgatatcctgcattcgtcattcaaaattaaagatcttggtcagt 18963344  T
Q  203 taaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagattttt 302  Q
    | ||||| || ||||||||||| ||||| ||||| ||  ||||||||||| | || ||||| || |||||  |||||||| | | ||||  | |   | |    
T  18963343 tgaaatatttccttggtttagaagttgcacattcatctcaaggaatctctttgtgccaaaggaaatattgcattgatcttcttattgatttaggtcatct 18963244  T
Q  303 agcttccaaacctgtttctacacc 326  Q
    ||||||||||||||||||||||||    
T  18963243 agcttccaaacctgtttctacacc 18963220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 4643416 - 4643364
Alignment:
Q  328 tctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 380  Q
    ||||| || ||||| ||| |||||| |||||||||| ||||||||||||||||    
T  4643416 tctgatccatcatgcaaactacacaatgattctagtgctccttatgatgatgt 4643364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University