View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_low_1 (Length: 650)
Name: NF17627_low_1
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 4e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 439 - 634
Target Start/End: Complemental strand, 2479147 - 2478955
Alignment:
| Q |
439 |
catagcaacatttgtgttgttgaaattagggtgaccatgtttctagtagtagaaatctatggtatgaccagaaagattgcaatgagtgcaatggctagaa |
538 |
Q |
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| T |
2479147 |
catagcaacatttgtct-gttgaaattagggtgaccatgtttctagtagtagaaatctatggtatgaccagaaagattgcaatgagtgcaatggctagaa |
2479049 |
T |
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| Q |
539 |
ccattcttgtgtttagtattaccacaaaatctgttaccaaaaccttatggtttccttgacgccaaggcgttaaaaagtatcttgggatcatcaact |
634 |
Q |
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| T |
2479048 |
ccattcttgtttttagtattaccacaaaatctgttaccacaaccttgtggtttccttgactc--aggcgttaaaaagtatcttgggatcatcaact |
2478955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 329 - 443
Target Start/End: Complemental strand, 2480075 - 2479961
Alignment:
| Q |
329 |
caatttattgttgaagaaaggatacaaagtgttcatacctttctttagaaataccaatgtgagaacgtcaacctcattatgtgttaccatgaaacttcac |
428 |
Q |
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| T |
2480075 |
caatttattgttgaagaaaggatacaaagtgttcatacctttctttagaaataccaatgtgagaacgtcaacctcattatgtgttaccatgaaactttac |
2479976 |
T |
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| Q |
429 |
aagaggcattcatag |
443 |
Q |
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| T |
2479975 |
aagaggcattcatag |
2479961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 66 - 195
Target Start/End: Complemental strand, 2480375 - 2480253
Alignment:
| Q |
66 |
ttgtagcacatatttatcagtgagaaattgaacactgcaagataaagaattgcataatttgtacacaaaa-taagattcagtttgaaatcaagtgagaat |
164 |
Q |
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| T |
2480375 |
ttgtagcacatatttatcagcgagaaattgaacactgcaa--------attgcataatttggacacaaaaataagattcagtttgaaatcaggtgagaat |
2480284 |
T |
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| Q |
165 |
acacatttgttaggtacatactaggtgaaaa |
195 |
Q |
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| T |
2480283 |
acacatttgttaggaacatactaggtgaaaa |
2480253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 2480177 - 2480138
Alignment:
| Q |
289 |
ccaaaaagtaaaattaacatgtaagtagcatgagataaca |
328 |
Q |
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| T |
2480177 |
ccaaaaagtaaaattaacatgtaaatagcatgagataaca |
2480138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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