View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17627_low_2 (Length: 402)
Name: NF17627_low_2
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 5 - 385
Target Start/End: Original strand, 35212381 - 35212760
Alignment:
| Q |
5 |
aactgcaagatatagtctgagatttgttagaattagctaagtttgttataggtagtttcaacttaaaaggttggttagtaacttagtattaattatttgt |
104 |
Q |
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| T |
35212381 |
aactgtaagatatagtctgagatttgttagaattagttaagtttgttataggtagtttcaacttaaa-ggttggttagtaacttagtattaattatttgt |
35212479 |
T |
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| Q |
105 |
taacttagttatgatcaccatattaagtgtatagtatacactacactccttgttatcaactttctgccattctatcaattccaagtaatcaatatttctc |
204 |
Q |
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| T |
35212480 |
taacttagttatgatcaccatattaagtgtatagtatacactacactccttgttatcaactttctgtcattctatcaattccaagtaatcaatatttctc |
35212579 |
T |
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| Q |
205 |
tcaaattattttcctcttaggttggactctaccattcttctcattagtaacaatgaaaaattaaactattggtaaatgtttgtttagtagagtaaaatta |
304 |
Q |
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| T |
35212580 |
tcaaattattttcctcttaggttggactctaccattcttctcattagtaacaatgaaaatttaaactattggtaaatgtttgtttagtagagtaaaatta |
35212679 |
T |
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| Q |
305 |
gaaggcagaggaagttcatacataaggggtcatctttggccatggtccttcatcaaaagcctttctagctgcagatactgc |
385 |
Q |
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| T |
35212680 |
gaaggcagaggaagttcatacataaggggtcatctttggccatggtccttcatcaaaagcctttctagctgcagatactgc |
35212760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 45518887 - 45518813
Alignment:
| Q |
172 |
cattctatcaattccaagtaatcaatatttctctcaaattattttcctcttaggttggactctaccattcttctca |
247 |
Q |
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| T |
45518887 |
cattctatcaatttcaaataatcaatctttctctcaatttatttttctctt-tgttgggctataccatgcttctca |
45518813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 11708361 - 11708318
Alignment:
| Q |
172 |
cattctatcaattccaagtaatcaatatttctctcaaattattt |
215 |
Q |
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| T |
11708361 |
cattctatcaattccaaataatcaatctttctctcaatttattt |
11708318 |
T |
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