View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17627_low_3 (Length: 348)
Name: NF17627_low_3
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17627_low_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 19392004 - 19391685
Alignment:
| Q |
1 |
ttttttagtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatctt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
19392004 |
tttttgagtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatccgattctttcctcaagatctgtaggga-ctaggtatctt |
19391906 |
T |
|
| Q |
101 |
agaaacctcttgctttaaataagcaaactccatatttattaccttttgtccttggcctaaataataacatttt--acacttctaaacttggtaagatctc |
198 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
19391905 |
agatacctcttgctttaaataagcaaactccatatttattaccttttgtccttggcctaaataataacattttctacacttctaaacttggtaagatctc |
19391806 |
T |
|
| Q |
199 |
tccaattactatgttgttccttttagcttggacaatcttgtttaattctttctttttgaatgctatttgttgtctttgtgctttttg-tgcatgccgaca |
297 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
19391805 |
tccaagtactatgttattccttttagcttggacaatcttgtttaattctttctttttgaatgctatttgttgtctttgtgctttttgttgcatgcctaca |
19391706 |
T |
|
| Q |
298 |
agtttttaattccctattacg |
318 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
19391705 |
agtttttaattccctattacg |
19391685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 28801842 - 28801697
Alignment:
| Q |
7 |
agtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaac |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || |||||| |||||||| || || || | |||||| ||||||||||||||||| |||| || |
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|
| T |
28801842 |
agtatgttgacactaagtgtcaacttgctgacatttctacaaaacctctaccatccgactcctttcgtaagatccgtagggaactaggtatcatagatac |
28801743 |
T |
|
| Q |
107 |
ctcttgctttaaat-aagcaaactccatatttattaccttttgtcc |
151 |
Q |
| |
|
||||| |||||||| || |||| | |||||||||||||||||||| |
|
|
| T |
28801742 |
ctcttactttaaataaataaaaccctatatttattaccttttgtcc |
28801697 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 13554602 - 13554712
Alignment:
| Q |
13 |
ttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctcttg |
112 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||| |||||| |||||||| |||| ||| ||||| || |||||||| |||||||| |||| |||||||| |
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|
| T |
13554602 |
ttgacaccaagtgtgaacttgcccacatttttacaaaaccactaccatccgattattttctcaaaatatgtagggagttaggtatcctagatacctcttg |
13554701 |
T |
|
| Q |
113 |
ctttaaataag |
123 |
Q |
| |
|
||||||||||| |
|
|
| T |
13554702 |
ctttaaataag |
13554712 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 23998785 - 23998881
Alignment:
| Q |
30 |
cttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctcttgctttaaataagcaa |
126 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |
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|
| T |
23998785 |
cttgctgatatttttacaaaacccctaccatccgagtcttttctcaagatctgtagggaactaggtatcttggatacctcttgccttaaataagcaa |
23998881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 24000149 - 24000245
Alignment:
| Q |
30 |
cttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctcttgctttaaataagcaa |
126 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |
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|
| T |
24000149 |
cttgctgatatttttacaaaacccctaccatccgagtcttttctcaagatctgtagggaactaggtatcttggatacctcttgccttaaataagcaa |
24000245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 23986552 - 23986644
Alignment:
| Q |
34 |
ctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctcttgctttaaataagcaa |
126 |
Q |
| |
|
|||| ||||||| |||||| |||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
23986552 |
ctgatatttttacaaaacccctaccatccgagtcttttctcaagatctgtagggaactaggtatcttggatacctcttgccttaaataagcaa |
23986644 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 23999467 - 23999563
Alignment:
| Q |
30 |
cttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctcttgctttaaataagcaa |
126 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
23999467 |
cttgctgatatttttacaaaactcctaccatccgagtcttttctcaagatctgtagggaactaggtatcttggatacctcttgccttaaataagcaa |
23999563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 18578652 - 18578516
Alignment:
| Q |
13 |
ttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctcttg |
112 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| | |||| |||||||||| |||||||| ||||| |||||||||||| |||||||||| ||| |||| |
|
|
| T |
18578652 |
ttgacactaagtgtcaacttgctgacagttttacataacctttaccatctgactctttcctaaagatatgtagggaactaagtatcttagataccacttg |
18578553 |
T |
|
| Q |
113 |
ctttaaataagcaa-actccatatttattaccttttg |
148 |
Q |
| |
|
|||| || |||||| || ||||||||||||||||| |
|
|
| T |
18578552 |
ctttcaaaaagcaagacctaatatttattaccttttg |
18578516 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 21389379 - 21389498
Alignment:
| Q |
7 |
agtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaac |
106 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||| |||||| |||||| |||||||| || ||||| ||||| ||| ||||| || |||||||||| || || |
|
|
| T |
21389379 |
agtacgttgacactaaaagtcagcttgctgacttttttacaaaaccactaccatccgagtcttttctcaaaatccgtaggaaattaggtatcttggatac |
21389478 |
T |
|
| Q |
107 |
ctcttgctttaaataagcaa |
126 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21389479 |
ctcttgctttaaataagcaa |
21389498 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 11645937 - 11646055
Alignment:
| Q |
8 |
gtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacc |
107 |
Q |
| |
|
||||||||||| ||| |||| |||| ||||||||||| |||||| || |||||||| ||||| |||| | || |||||||||||||||||| || ||| |
|
|
| T |
11645937 |
gtatgttgacattaaaagtcaacttgatgacatttttacaaaacctcttccatctgagtcttttctcatggtccatagggaactaggtatcttggatacc |
11646036 |
T |
|
| Q |
108 |
tcttgctttaaataagcaa |
126 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
11646037 |
tcttgccttaaataagcaa |
11646055 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 126
Target Start/End: Complemental strand, 9025537 - 9025433
Alignment:
| Q |
22 |
agtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctcttgctttaaata |
121 |
Q |
| |
|
||||||| |||| ||| ||||||||||||| || ||| |||||||| |||| || |||||||| |||||||||||| | |||||| |||||||||| |
|
|
| T |
9025537 |
agtgtcaacttgttgatatttttataaaactactttaatcagattcttttatcaaaatatgtagggagctaggtatcttatatacctctagctttaaata |
9025438 |
T |
|
| Q |
122 |
agcaa |
126 |
Q |
| |
|
||||| |
|
|
| T |
9025437 |
agcaa |
9025433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 20065302 - 20065186
Alignment:
| Q |
10 |
atgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctc |
109 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| ||||| | ||||||| || |||||||||||||| |||||||| | ||||||||| || || |
|
|
| T |
20065302 |
atgttgacacaaagtgtcaacttgctgacatttttacaaaactgataccatccgactctttcctcaagattcatagggaaccatatatcttagatacatc |
20065203 |
T |
|
| Q |
110 |
ttgctttaaataagcaa |
126 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
20065202 |
tagctttaaataagcaa |
20065186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 14972221 - 14972102
Alignment:
| Q |
7 |
agtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaac |
106 |
Q |
| |
|
|||||||||||||||| |||| ||||| || ||||| | |||||| |||||||| | ||||| ||||||||| ||||||||||||||||||| || || |
|
|
| T |
14972221 |
agtatgttgacactaaaggtcagcttgccgatattttcacaaaaccactaccatccaagtcttttctcaagatccgtagggaactaggtatcttggatac |
14972122 |
T |
|
| Q |
107 |
ctcttgctttaaataagcaa |
126 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
14972121 |
ctctttccttaaataagcaa |
14972102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 15401697 - 15401578
Alignment:
| Q |
7 |
agtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaac |
106 |
Q |
| |
|
|||||||||||||||| |||| ||||| || ||||| | |||||| |||||||| | ||||| ||||||||| ||||||||||||||||||| || || |
|
|
| T |
15401697 |
agtatgttgacactaaaggtcagcttgccgatattttcacaaaaccactaccatccaagtcttttctcaagatccgtagggaactaggtatcttggatac |
15401598 |
T |
|
| Q |
107 |
ctcttgctttaaataagcaa |
126 |
Q |
| |
|
||||| | |||||||||||| |
|
|
| T |
15401597 |
ctctttccttaaataagcaa |
15401578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 9688225 - 9688335
Alignment:
| Q |
13 |
ttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatcttagaaacctcttg |
112 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||| |||||| |||||||| |||| ||| ||||| || |||||||| |||||||| |||| |||||||| |
|
|
| T |
9688225 |
ttgacaccaagtgtgaacttgcccacatttttacaaaaccactaccatccgattattttctcaaaatatgtagggagttaggtatcctagatacctcttg |
9688324 |
T |
|
| Q |
113 |
ctttaaataag |
123 |
Q |
| |
|
||||||||||| |
|
|
| T |
9688325 |
ctttaaataag |
9688335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 14757589 - 14757463
Alignment:
| Q |
1 |
ttttttagtatgttgacactaagtgtcatcttgctgacatttttataaaaccgctaccatctgattctttcctcaagatctgtagggaactaggtatctt |
100 |
Q |
| |
|
||||| ||||| ||||||| || ||||| ||||| | ||||||| ||||| || ||||| || ||||| || || ||| |||| |||||||||||| | |
|
|
| T |
14757589 |
tttttgagtatattgacaccaaatgtcaacttgcaaatatttttagcaaaccacttccatccgactcttttcttaaaatccgtagcgaactaggtatcat |
14757490 |
T |
|
| Q |
101 |
agaaacctcttgctttaaataagcaaa |
127 |
Q |
| |
|
|| ||| ||||||||||||||||||| |
|
|
| T |
14757489 |
ggataccacttgctttaaataagcaaa |
14757463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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