View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17627_low_4 (Length: 335)

Name: NF17627_low_4
Description: NF17627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17627_low_4
NF17627_low_4
[»] chr4 (4 HSPs)
chr4 (88-335)||(52481058-52481305)
chr4 (82-220)||(16408195-16408333)
chr4 (9-90)||(52472334-52472415)
chr4 (220-335)||(16408047-16408162)
[»] chr2 (7 HSPs)
chr2 (9-220)||(40751559-40751771)
chr2 (9-220)||(41477304-41477516)
chr2 (89-189)||(41470503-41470603)
chr2 (88-188)||(41484390-41484490)
chr2 (220-335)||(41477549-41477664)
chr2 (220-332)||(40751804-40751916)
chr2 (220-332)||(41484555-41484667)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 88 - 335
Target Start/End: Original strand, 52481058 - 52481305
Alignment:
Q  88 gactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481058 gactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgg 52481157  T
Q  188 aaattgaacagttgagagaagctttcgaggtaaagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatga 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481158 aaattgaacagttgagagaagctttcgaggtaaagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatga 52481257  T
Q  288 tcttcaacgaacacttgttgtccaggagcgcaaaactaatgacgagtt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481258 tcttcaacgaacacttgttgtccaggagcgcaaaactaatgacgagtt 52481305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 16408333 - 16408195
Alignment:
Q  82 tttgatgactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattgg 181  Q
    ||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||||    
T  16408333 tttgaggactattttggttgtatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaacaagcattgg 16408234  T
Q  182 aattggaaattgaacagttgagagaagctttcgaggtaa 220  Q
    | |||||| |||||| | | |||| ||||||| ||||||    
T  16408233 agttggaagttgaacggctaagaggagctttccaggtaa 16408195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 52472334 - 52472415
Alignment:
Q  9 gaagaatataaggcacacatttgattttcctttcatgtacaatattttattcagttacatttatccacataggtttgatgac 90  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52472334 gaagaacataaggcacgcatttgattttcctttcatgtacaatatttaattcagttacatttatccacataggtttgatgac 52472415  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 16408162 - 16408047
Alignment:
Q  220 aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatgatcttcaacgaacacttgttgtccaggagcgca 319  Q
    ||||||||| |||| ||||||  |||||||||||||||||| |||||||   |  | |   |||| |||||||||| |||||||||||| || |||||||    
T  16408162 aagaaaaaattggaagcaatcagaatggagctgcaggaaaaggaagaggaattggagggtgtggaagatcttcaacaaacacttgttgttcaagagcgca 16408063  T
Q  320 aaactaatgacgagtt 335  Q
    ||||||||||||||||    
T  16408062 aaactaatgacgagtt 16408047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 40751559 - 40751771
Alignment:
Q  9 gaagaatataaggcacacatttgattttcctttcatgtacaatattttattcagttacatttatccacataggttt-gatgactcttttggttggatgtt 107  Q
    |||||| ||||||||| ||||| |||||||| | ||  ||| | ||| |||||||| ||| |||  || ||||||| || ||||||||||||||||||||    
T  40751559 gaagaacataaggcacgcatttcattttcctattatcgacagtttttaattcagtttcatgtatatacttaggttttgaggactcttttggttggatgtt 40751658  T
Q  108 gcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattggaaattgaacagttgagagaa 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||||||| || |||||||||||||||||||||||||| || |||||| ||| || |    
T  40751659 gcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggactggatgcaaaacaagcattggaattggagatagaacagctgaaagga 40751758  T
Q  208 gctttcgaggtaa 220  Q
    |||||| ||||||    
T  40751759 gctttccaggtaa 40751771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 41477304 - 41477516
Alignment:
Q  9 gaagaatataaggcacacatttgattttcctttcatgtacaatattttattcagttacatttatccacat-aggtttgatgactcttttggttggatgtt 107  Q
    |||||| ||||||||   |||| | |||||||| || |||| | ||| ||||||| ||||||||  || | || ||||| ||||||||||||||||||||    
T  41477304 gaagaacataaggcaagtatttcactttccttttatctacagtttttaattcagtaacatttatatacttcagttttgaggactcttttggttggatgtt 41477403  T
Q  108 gcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattggaaattgaacagttgagagaa 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||||| ||||| || |||| | ||| || |    
T  41477404 gcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaacaagcattggagttggagatagaacggctgaaagga 41477503  T
Q  208 gctttcgaggtaa 220  Q
    |||||| ||||||    
T  41477504 gctttccaggtaa 41477516  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 41470503 - 41470603
Alignment:
Q  89 actcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgga 188  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||  |||||||||||| |||||||||| |||||||||||||    
T  41470503 actcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacattggaattgga 41470602  T
Q  189 a 189  Q
    |    
T  41470603 a 41470603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 41484390 - 41484490
Alignment:
Q  88 gactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgg 187  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||| |||||||| ||||| |||||||||||||    
T  41484390 gactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattggaattgg 41484489  T
Q  188 a 188  Q
    |    
T  41484490 a 41484490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 41477549 - 41477664
Alignment:
Q  220 aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatgatcttcaacgaacacttgttgtccaggagcgca 319  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||   |  ||| | |||| |||||||||| |||||| ||||| || |||||||    
T  41477549 aagaaaaaactggaggaaatcaaaatggagctgcaggaaaaagaagaggaattggaaggcgtggaagatcttcaacaaacactggttgttcaagagcgca 41477648  T
Q  320 aaactaatgacgagtt 335  Q
    ||||||||||||||||    
T  41477649 aaactaatgacgagtt 41477664  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 40751804 - 40751916
Alignment:
Q  220 aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatgatcttcaacgaacacttgttgtccaggagcgca 319  Q
    ||||||||| |||| ||||||  |||||||||||||||||| |||||||   |  |  || |||| |||||||||| |||||| ||||| ||||| ||||    
T  40751804 aagaaaaaattggaagcaatcagaatggagctgcaggaaaaggaagaggaattggagaacgtggaagatcttcaacaaacactggttgttcaggaacgca 40751903  T
Q  320 aaactaatgacga 332  Q
    |||||||||||||    
T  40751904 aaactaatgacga 40751916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 41484555 - 41484667
Alignment:
Q  220 aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatgatcttcaacgaacacttgttgtccaggagcgca 319  Q
    ||||||||| |||| ||||||  |||||||||||||||||| |||||||   |  | |   |||| |||||||||| |||||| || || ||||||||||    
T  41484555 aagaaaaaattggaagcaatcagaatggagctgcaggaaaaggaagaggaattagagggtgtggaagatcttcaacaaacactagtagttcaggagcgca 41484654  T
Q  320 aaactaatgacga 332  Q
    |||||||||||||    
T  41484655 aaactaatgacga 41484667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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