View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17628_high_14 (Length: 242)
Name: NF17628_high_14
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_high_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 21243084 - 21242861
Alignment:
| Q |
19 |
gtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243084 |
gtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataa |
21242985 |
T |
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| Q |
119 |
ccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21242984 |
ccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcatcaacgacgctgc |
21242885 |
T |
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| Q |
219 |
gatgaagttcttgtgtgtgagaat |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
21242884 |
gatgaagttcttgtgtgtgagaat |
21242861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 21258849 - 21258633
Alignment:
| Q |
19 |
gtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataa |
118 |
Q |
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|||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
21258849 |
gtcactctatacttttcaatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataa |
21258751 |
T |
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| Q |
119 |
ccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgc |
218 |
Q |
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| T |
21258750 |
ccgccaatctaaacacatgaaacatcggtaaaacgcagaggaacac---atttaattcccctgctaaatcatcatccatgtttatcatcaatgaagtcgc |
21258654 |
T |
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| Q |
219 |
gatgaagttcttgtgtgtgag |
239 |
Q |
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| T |
21258653 |
gatgaagttcttgtgggtgag |
21258633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 21254346 - 21254152
Alignment:
| Q |
19 |
gtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataa |
118 |
Q |
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|||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
21254346 |
gtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgcgtatgttataa |
21254248 |
T |
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| Q |
119 |
ccgccaatccaaacacatg---aaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacg |
211 |
Q |
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|| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
21254247 |
ccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaatcattaacg |
21254152 |
T |
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