View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17628_high_18 (Length: 208)
Name: NF17628_high_18
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 4569510 - 4569338
Alignment:
| Q |
17 |
taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
116 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569510 |
taattcttattgttatccttctgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
4569411 |
T |
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| Q |
117 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccacc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4569410 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgctgcaccacc |
4569338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 14704660 - 14704488
Alignment:
| Q |
17 |
taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14704660 |
taattcttattgttatccttctgagcagcatgcaaatcagcaaaatagcccttaggacttttctcaaattgctcccttgaaatgtttgatccatctccac |
14704561 |
T |
|
| Q |
117 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccacc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14704560 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgctgcaccacc |
14704488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 49042877 - 49042718
Alignment:
| Q |
30 |
tatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccaccaggagctttcat |
129 |
Q |
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||||||| ||| ||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49042877 |
tatccttttgagcagcatgcaaatcagcaaaatagccttgtgggtttttctcaaattcctcccttgaaatgttggatccatctccaccaggagctttcat |
49042778 |
T |
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| Q |
130 |
tgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccacc |
189 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
49042777 |
tgtatcacctttagtagtagcaccaacattgtctttgggattgtttgctgcaccaccacc |
49042718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 49058738 - 49058566
Alignment:
| Q |
17 |
taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
116 |
Q |
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|||||||| |||||||| || ||| ||| ||||||||||||||||||||| | || |||||| |||||| ||||||||||||||| ||||||| ||||| |
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| T |
49058738 |
taattcttcttgttatctttttgagcagtatgcaaatcagcaaaatagccttgtgggtttttcacaaattcctcccttgaaatgttggatccatttccac |
49058639 |
T |
|
| Q |
117 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcaccacc |
189 |
Q |
| |
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|||||||||||||||||||||| ||||| ||| | ||||| ||||| |||||||||||||| |||||| |||| |
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| T |
49058638 |
caggagctttcattgtatcacccttagtggtactgccaacgttgtccttgggattgtttgcagcagcagcacc |
49058566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 22643076 - 22642906
Alignment:
| Q |
17 |
taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
116 |
Q |
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|||||||| ||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
22643076 |
taattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagccttgtggatttttctcaaattgctcccttgaaatgttggatccatcttcac |
22642977 |
T |
|
| Q |
117 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcacca |
187 |
Q |
| |
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||||||||||||| |||||||||||||| ||| | ||||| ||||| |||| ||||||||| ||||||||| |
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| T |
22642976 |
caggagctttcatcgtatcacctttagtggtactgccaacgttgtccttggcattgtttgcagcagcacca |
22642906 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 9763635 - 9763805
Alignment:
| Q |
17 |
taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
116 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |
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| T |
9763635 |
taattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctc |
9763734 |
T |
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| Q |
117 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcacca |
187 |
Q |
| |
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|||| |||||||||| |||| | ||||| ||| | ||||| ||||| || ||||||||||| ||||||||| |
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| T |
9763735 |
caggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtttgcagcagcacca |
9763805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 9778088 - 9778258
Alignment:
| Q |
17 |
taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
116 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |
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| T |
9778088 |
taattcttcttgttatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctc |
9778187 |
T |
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| Q |
117 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcacca |
187 |
Q |
| |
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|||| |||||||||| |||| | ||||| ||| | ||||| ||||| || ||||||||||| ||||||||| |
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| T |
9778188 |
caggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtttgcagcagcacca |
9778258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 9769775 - 9769945
Alignment:
| Q |
17 |
taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
116 |
Q |
| |
|
|||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |
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| T |
9769775 |
taattcttcttcctatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctc |
9769874 |
T |
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| Q |
117 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcacca |
187 |
Q |
| |
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|||| |||||||||| |||| | ||||| ||| | ||||| ||||| || ||||||||||| |||| |||| |
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| T |
9769875 |
caggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtttgcagcagaacca |
9769945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 9783793 - 9783963
Alignment:
| Q |
17 |
taattcttattgttatccttctgatcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattgctcccttgaaatgtttgatccatctccac |
116 |
Q |
| |
|
|||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |
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| T |
9783793 |
taattcttcttcctatccttttgagcagcatgcaaatcagcaaaatagcccttaggatttttctcaaattcctcccttgaaatgttggatccatctcctc |
9783892 |
T |
|
| Q |
117 |
caggagctttcattgtatcacctttagtagtagtaccaacattgtctttgggattgtttgctgcagcacca |
187 |
Q |
| |
|
|||| |||||||||| |||| | ||||| ||| | ||||| ||||| || ||||||||||| |||| |||| |
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| T |
9783893 |
caggtgctttcattggatcaaccttagtggtactgccaacgttgtcctttggattgtttgcagcagaacca |
9783963 |
T |
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