View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17628_high_5 (Length: 386)
Name: NF17628_high_5
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 9230155 - 9229786
Alignment:
| Q |
1 |
ggctagttcatcgttgtacatgttatatcaaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttcattttgctacgccaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230155 |
ggctagttcctcgttgtacatgttatatcaaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttcattttgctacgccaa |
9230056 |
T |
|
| Q |
101 |
ctttctaaaagagaag-cgcatcaggaactgctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggca |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230055 |
ctttctaaaagagaagacgcatcaggaactactcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggca |
9229956 |
T |
|
| Q |
200 |
gaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9229955 |
gaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaatt |
9229856 |
T |
|
| Q |
300 |
cataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttg |
369 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9229855 |
cataaatgaggtggttgttttgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttg |
9229786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 368
Target Start/End: Complemental strand, 9162231 - 9161993
Alignment:
| Q |
130 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa |
229 |
Q |
| |
|
|||||||| |||| |||||| ||||| |||||||| ||||| ||||| || || || ||||| || |||||||||||||| ||||| |||| ||||||| |
|
|
| T |
9162231 |
gctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagttttcaaaggag |
9162132 |
T |
|
| Q |
230 |
ttctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaat |
329 |
Q |
| |
|
| || |||| |||| || || || |||| || ||||||||||| ||||| | ||| | ||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
9162131 |
tcttaccagataacaaaatcgtcgctgtcaaaaaatccaaaataatagatgcaaatcaaattgagcagttcattaacgaggtagttgttctgtcccaaat |
9162032 |
T |
|
| Q |
330 |
aaatcatagaaatgttgtcaaactcttgggatgttgttt |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9162031 |
aaatcatagaaatgttgtcaaactcttgggatgttgttt |
9161993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 24 - 368
Target Start/End: Original strand, 9118114 - 9118459
Alignment:
| Q |
24 |
tatatcaaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttcattttgctacgccaactttctaaaagagaag-cgcatc |
122 |
Q |
| |
|
|||| |||| |||||||||| | ||||||||| | ||||||||| |||||||||| |||||||||||||||| |||| | || |||||||| | | || |
|
|
| T |
9118114 |
tataccaaaaaagaaaactcatcaaactaaaacaaaaattctttcaacaaaatggtggtttcattttgctacaaaaactctttacaagagaagacacgtc |
9118213 |
T |
|
| Q |
123 |
aggaactgctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttac |
222 |
Q |
| |
|
| | ||||| || |||| |||| | |||||||| ||||||||||||| ||| || || || ||||| ||||| ||||||||||||||||| ||| | |
|
|
| T |
9118214 |
tcaatcagctcagatattcacagaaaaggaacttaaaaaagctaccaacagctacgacgaaagcttaatcattggaagaggaggtttcggtacaattttc |
9118313 |
T |
|
| Q |
223 |
aaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgt |
322 |
Q |
| |
|
|||||| || || | || ||||| || || || |||| ||||||| |||||| || || | ||| | ||||||||||| |||||||| ||| |||||| |
|
|
| T |
9118314 |
aaaggagttttacccgataacagaatcgtggctgtcaaaaagtccagaataatagacgcaaatcaaatcgagcaattcattaatgaggtagttattctgt |
9118413 |
T |
|
| Q |
323 |
cccaaataaatcatagaaatgttgtcaaactcttgggatgttgttt |
368 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || || |||||||| |
|
|
| T |
9118414 |
cccaaataaatcataggaatgttgtcaaacttttagggtgttgttt |
9118459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 130 - 354
Target Start/End: Complemental strand, 9171057 - 9170833
Alignment:
| Q |
130 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa |
229 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
9171057 |
gctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaaggag |
9170958 |
T |
|
| Q |
230 |
ttctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaat |
329 |
Q |
| |
|
|| || | ||||||| || || || | || || ||||||||||| || || | ||| | ||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
9170957 |
ttttacctgacaacaaaatcgtcgctgtaaaaaaatccaaaataattgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaat |
9170858 |
T |
|
| Q |
330 |
aaatcatagaaatgttgtcaaactc |
354 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
9170857 |
aaatcataggaatgttgtcaaactc |
9170833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 59 - 368
Target Start/End: Complemental strand, 9156391 - 9156081
Alignment:
| Q |
59 |
aaattctttaaacaaaatggcggtttcattttgctacgccaactttctaaaagagaag-cgcatcaggaactgctcaaattttcaaagaagatgaactta |
157 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||| ||||| |||| |||||||| | | || | | ||| |||| |||| ||||| ||||||| |
|
|
| T |
9156391 |
aaattctttcaacaaaatggtggttccattttgctacaacaactatctacaagagaagacacctcgcaatcagctgaaatattcactgaagaggaactta |
9156292 |
T |
|
| Q |
158 |
agaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaat |
257 |
Q |
| |
|
||||||| ||||| ||||| || || | ||||| ||||||||||||||||| ||||| |||| ||||||| || || | ||||||| || ||||| | |
|
|
| T |
9156291 |
agaaagccaccaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaacaaaatcgttgctgt |
9156192 |
T |
|
| Q |
258 |
caagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttg |
357 |
Q |
| |
|
|| || || |||||||| ||||| | ||| | ||||| || || |||||||| ||||| || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9156191 |
aaaaaaatcaaaaataatagatgcaaatcaaatcgagcagtttattaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttg |
9156092 |
T |
|
| Q |
358 |
ggatgttgttt |
368 |
Q |
| |
|
||||||||||| |
|
|
| T |
9156091 |
ggatgttgttt |
9156081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 369
Target Start/End: Complemental strand, 9219242 - 9218901
Alignment:
| Q |
29 |
caaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttcattttgctacgccaactttctaaaagagaag-cgcatcaggaa |
127 |
Q |
| |
|
|||| ||| |||||| | |||||||| | ||||||||| |||||||||| |||| |||||||||| ||||| || | |||||||| | | || | |
|
|
| T |
9219242 |
caaaaaaggaaactcatcaaactaaagcaaaaattctttcaacaaaatggtggttctattttgctacaacaactatcaacaagagaagacacttcgcaat |
9219143 |
T |
|
| Q |
128 |
ctgctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagg |
227 |
Q |
| |
|
| |||||||| |||| ||||| |||||||||||||| ||||| ||||| || || || ||||| || || ||||||||||| ||||| |||| |||||| |
|
|
| T |
9219142 |
cagctcaaatattcacggaagaggaacttaagaaagccaccaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaagg |
9219043 |
T |
|
| Q |
228 |
aattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaa |
327 |
Q |
| |
|
|||| | | || |||| ||||| || |||| |||||||||||||| || || | || | ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
9219042 |
aattttgcccgataacaaaattgtcgctgtcaaaaagtccaaaataatagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaa |
9218943 |
T |
|
| Q |
328 |
ataaatcatagaaatgttgtcaaactcttgggatgttgtttg |
369 |
Q |
| |
|
||||||||||| || ||||||||||| || || ||||||||| |
|
|
| T |
9218942 |
ataaatcataggaacgttgtcaaacttttagggtgttgtttg |
9218901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 354
Target Start/End: Complemental strand, 9200621 - 9200400
Alignment:
| Q |
133 |
caaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattc |
232 |
Q |
| |
|
||||| |||| |||||| |||||||||||||| ||||| || || || || || ||||| || || ||||||||||| ||||| |||||||||||| || |
|
|
| T |
9200621 |
caaatattcacagaagaggaacttaagaaagccaccaaaaaatacgacgaaagcttaatcatcggtagaggaggttttggtacagtttacaaaggagttt |
9200522 |
T |
|
| Q |
233 |
tagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaa |
332 |
Q |
| |
|
|| | || |||| ||||| || | || || ||||||||||| || || | ||| | ||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
9200521 |
tacctgataacaaaattgtcgctgtaaaaaaatccaaaataattgacgcaaatcaaattgagcaattcattaatgaggtagttgttctgacccaaataaa |
9200422 |
T |
|
| Q |
333 |
tcatagaaatgttgtcaaactc |
354 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
9200421 |
tcataggaatgttgtcaaactc |
9200400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 181 - 368
Target Start/End: Original strand, 1868284 - 1868471
Alignment:
| Q |
181 |
gagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatg |
280 |
Q |
| |
|
|||| |||||| ||||||| ||| ||||| ||||| |||| ||||||| |||||| || || || || ||||| ||||| || || |||||||| ||| |
|
|
| T |
1868284 |
gagaatttaatcattggcaaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagata |
1868383 |
T |
|
| Q |
281 |
ccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgttt |
368 |
Q |
| |
|
| |||| | || |||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
1868384 |
gaagccaaatcgatcaattcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgttt |
1868471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 366
Target Start/End: Complemental strand, 1816406 - 1816170
Alignment:
| Q |
130 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa |
229 |
Q |
| |
|
||||| |||||||||||| ||||||| | ||||||||| ||||||| ||| ||||| ||||| || || ||||||||||| ||||| |||| |||||| |
|
|
| T |
1816406 |
gctcacattttcaaagaaaatgaactaaggaaagctactaacaactttgatgagagcttaatcataggtagaggaggttttggtacagttttcaaagggg |
1816307 |
T |
|
| Q |
230 |
ttctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaat |
329 |
Q |
| |
|
|| | || || || ||||| || ||||| |||||||||| ||| || | | |||| | || |||||||| || ||||||| |||| | || ||||| |
|
|
| T |
1816306 |
aacttgatgataatagaattgtggctatcaaaaagtccaaaacaatagacgaaagccaaattgaacaattcattaacgaggtggatgttgtctctcaaat |
1816207 |
T |
|
| Q |
330 |
aaatcatagaaatgttgtcaaactcttgggatgttgt |
366 |
Q |
| |
|
|||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
1816206 |
aaatcacaggaatgtggtcaaactcttggggtgttgt |
1816170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 368
Target Start/End: Original strand, 1842675 - 1842862
Alignment:
| Q |
181 |
gagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatg |
280 |
Q |
| |
|
|||| |||||| ||||||| ||| ||||| ||||| |||||||||||| |||||| || || || || ||||| ||||| || || |||||||| ||| |
|
|
| T |
1842675 |
gagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagata |
1842774 |
T |
|
| Q |
281 |
ccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgttt |
368 |
Q |
| |
|
| |||| | | |||||||| |||||||| || |||| || |||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
1842775 |
gaagccaaatcaatcaattcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgttt |
1842862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 9179039 - 9178941
Alignment:
| Q |
130 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
228 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
9179039 |
gctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaagga |
9178941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 366
Target Start/End: Original strand, 1856639 - 1856874
Alignment:
| Q |
131 |
ctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaat |
230 |
Q |
| |
|
|||| |||||| ||||| ||||||| | |||||| || ||||| | ||| ||||| ||||| || || | ||||||||| ||||| ||||||||||| |
|
|
| T |
1856639 |
ctcacattttcgaagaaaatgaactaaggaaagccactaacaaatttgatgagagcttaatcataggtaaaggaggttttggtacagtttacaaagggga |
1856738 |
T |
|
| Q |
231 |
tctagcagacaacaggattgttgcaatcaagaagtccaaaataatggatgccacccaagtagagcaattcataaatgaggtggttgttctgtcccaaata |
330 |
Q |
| |
|
|| | || || || |||||||| ||||| ||||| |||| ||| || | |||| | || |||||||| |||||||||| |||| | || |||||| |
|
|
| T |
1856739 |
acttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaata |
1856838 |
T |
|
| Q |
331 |
aatcatagaaatgttgtcaaactcttgggatgttgt |
366 |
Q |
| |
|
||||| |||||||| ||||||||||| || |||||| |
|
|
| T |
1856839 |
aatcacagaaatgtggtcaaactcttagggtgttgt |
1856874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 40568360 - 40568430
Alignment:
| Q |
298 |
ttcataaatgaggtggttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgttt |
368 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| || ||||||||||| || || |||||||| |||||||| |
|
|
| T |
40568360 |
ttcatcaatgaagtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgttt |
40568430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University