View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17628_high_6 (Length: 354)
Name: NF17628_high_6
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 42717107 - 42716768
Alignment:
| Q |
1 |
atcaccacattgataaccgctgaatcaataaatctttgtcctcaggactaagctgataagcatatcaagaactgggaaaaatttaaacagattgagcacc |
100 |
Q |
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| T |
42717107 |
atcaccacattgataaccgctgaatcaataaatctttgtcctcgggactaagctgataagcatatcaagaactgggaaaaaattaaacagattgagcacc |
42717008 |
T |
|
| Q |
101 |
aagcaacaccactccctgcattatttcaaatagcaaattggttgctatcactgcataatagcaatatatatgatatgtcaatcttgttgattattcccct |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42717007 |
aagcaacaccacttcctgcattatttcaaatagcaaattggttgctatcactgcataatagcaatatatatgatatgtcaatcttgttgattattcccct |
42716908 |
T |
|
| Q |
201 |
ctgtcttcatcataatgatccaaaataataactttaaaagattctcagcaaattagcagtaaggcaagactaaaaatatgatccccacctacaatgttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42716907 |
ctgtcttcatcataatgatccaaaataataactttaaaagattctcagcaaattagcagtaaggcaagactaaaaatatgatccccacctacaatgttta |
42716808 |
T |
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| Q |
301 |
gtacaggtaagcctataaaaaatgtattgaagtaattact |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42716807 |
gtacaggtaagcctataaaaaatgtattgaagtaattact |
42716768 |
T |
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