View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17628_low_1 (Length: 460)
Name: NF17628_low_1
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 7754968 - 7754537
Alignment:
| Q |
16 |
aaacctctcactttcagaggttataatttaagtctgttcataattggttctaattttatttgaaggatgaactttattgatctatatatannnnnnnn-- |
113 |
Q |
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| T |
7754968 |
aaacctctcactttcagaggttataatttaagtctgttcataattggttctaattttatttgaaggatga-ctttattgatctatatatatatttttttt |
7754870 |
T |
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| Q |
114 |
atactgtgttggaatcagttttctctatttggatctttatccaatgttggagccatggtgggagccattgctagtggtcaaatggcagaatacatcggac |
213 |
Q |
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| T |
7754869 |
atactgtgttggaattagttttctctatttggatctttatccaatgttggagccatggtgggagccattgctagtggtcaaatggcagaatacatcggac |
7754770 |
T |
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| Q |
214 |
gcaaaggggtattttaataacttcatcattctcgtatattgcctccttaattattttcaaattattagttgtaagattgaatcactagtgttagtactgt |
313 |
Q |
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| T |
7754769 |
gcaaaggggtattttaataactttatcattctcgtatattgcctccttaattattttcaaattattagttgtaagattgaatcactagtgttagtactgt |
7754670 |
T |
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| Q |
314 |
gg--ttcttttttcttcttttaagttgatgacatttttcctatgttaataaaatgaaaatgcagtcattgattattgctgcgatccccaatataatagga |
411 |
Q |
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| T |
7754669 |
ggtttttttttttcttcttttaagttgatgacatttttcctatgttaataaaatgaaaatgcagtcattgattattgctgcgatccccaatataatagga |
7754570 |
T |
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| Q |
412 |
tggttggccatctcttttgcccaagtaagcttc |
444 |
Q |
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| T |
7754569 |
tggttggccatctcttttgcccaagtaagcttc |
7754537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 32928125 - 32928219
Alignment:
| Q |
130 |
agttttctctatttggatctttatccaatgttggagccatggtgggagccattgctagtggtcaaatggcagaatacatcggacgcaaaggggta |
224 |
Q |
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|||||||||| |||||||||||||||||||| || || ||||||||||| || || |||||||| || |||||||| |||| |||||||||||| |
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| T |
32928125 |
agttttctctgtttggatctttatccaatgtgggtgctatggtgggagctatagcaagtggtcagatagcagaatatgtcgggcgcaaaggggta |
32928219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 32928317 - 32928386
Alignment:
| Q |
371 |
tgcagtcattgattattgctgcgatccccaatataataggatggttggccatctcttttgcccaagtaag |
440 |
Q |
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| T |
32928317 |
tgcagtcattgatgattgcttcgattcccaatataatagggtggctcgccatttcttttgccaaagtaag |
32928386 |
T |
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