View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17628_low_11 (Length: 265)
Name: NF17628_low_11
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 5776573 - 5776820
Alignment:
| Q |
1 |
tgaaggaaaataaggatgcaaaattcatattaacagggcatagtttgggtggagcattggctattctgtttgtcgcaatgcttatattccatgaggaaga |
100 |
Q |
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| T |
5776573 |
tgaaggaaaataaggatgcaaaattcatattaacagggcatagtttgggtggagcattggctattctgtttgtcgcaatgcttatattccatgaggaaga |
5776672 |
T |
|
| Q |
101 |
agacatgttggataagttacaaggtgtttatacatttgggcaaccaagagtaggagacgagaagtttggggagttcatgaaaagcaacttgaaaaagtat |
200 |
Q |
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| T |
5776673 |
agacatgttggataagttacaaggtgtttatacatttgggcaaccaagagtaggagacgagaagtttggggagttcatgaaaagcaagttgaaaaagtat |
5776772 |
T |
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| Q |
201 |
gatgtgaagtattttagatatgtttactctaatgatatggttccaagg |
248 |
Q |
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| T |
5776773 |
gatgtgaagtattttagatatgtttactctaatgatatggttccaagg |
5776820 |
T |
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