View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17628_low_15 (Length: 242)

Name: NF17628_low_15
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17628_low_15
NF17628_low_15
[»] chr4 (3 HSPs)
chr4 (19-242)||(21242861-21243084)
chr4 (19-239)||(21258633-21258849)
chr4 (19-211)||(21254152-21254346)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 21243084 - 21242861
Alignment:
Q  19 gtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21243084 gtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataa 21242985  T
Q  119 ccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21242984 ccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcatcaacgacgctgc 21242885  T
Q  219 gatgaagttcttgtgtgtgagaat 242  Q
    ||||||||||||||||||||||||    
T  21242884 gatgaagttcttgtgtgtgagaat 21242861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 21258849 - 21258633
Alignment:
Q  19 gtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataa 118  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| | |||||||| | |||||||||||||||||| |||||||||||||    
T  21258849 gtcactctatacttttcaatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataa 21258751  T
Q  119 ccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgc 218  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||    ||||||||||| ||||||||||||||||||||||||||||| || |  ||    
T  21258750 ccgccaatctaaacacatgaaacatcggtaaaacgcagaggaacac---atttaattcccctgctaaatcatcatccatgtttatcatcaatgaagtcgc 21258654  T
Q  219 gatgaagttcttgtgtgtgag 239  Q
    ||||||||||||||| |||||    
T  21258653 gatgaagttcttgtgggtgag 21258633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 21254346 - 21254152
Alignment:
Q  19 gtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataa 118  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||    
T  21254346 gtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgcgtatgttataa 21254248  T
Q  119 ccgccaatccaaacacatg---aaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacg 211  Q
    || |||||| |||||||||   |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||    
T  21254247 ccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaatcattaacg 21254152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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