View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17628_low_16 (Length: 237)
Name: NF17628_low_16
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 21243079 - 21242861
Alignment:
| Q |
1 |
tttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgcc |
100 |
Q |
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| T |
21243079 |
tttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgcc |
21242980 |
T |
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| Q |
101 |
aatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgcgatga |
200 |
Q |
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| T |
21242979 |
aatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcatcaacgacgctgcgatga |
21242880 |
T |
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| Q |
201 |
agttcttgtgtgtgagaat |
219 |
Q |
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||||||||||||||||||| |
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| T |
21242879 |
agttcttgtgtgtgagaat |
21242861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 21258842 - 21258633
Alignment:
| Q |
3 |
tatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaa |
102 |
Q |
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||||||| ||||||||||||||||| |||||||||||||| |||||| | |||||||| | |||||||||||||||||| |||||||||||||||||||| |
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| T |
21258842 |
tatacttttcaatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataaccgccaa |
21258744 |
T |
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| Q |
103 |
tccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgcgatgaag |
202 |
Q |
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| T |
21258743 |
tctaaacacatgaaacatcggtaaaacgcagaggaacac---atttaattcccctgctaaatcatcatccatgtttatcatcaatgaagtcgcgatgaag |
21258647 |
T |
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| Q |
203 |
ttcttgtgtgtgag |
216 |
Q |
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|||||||| ||||| |
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| T |
21258646 |
ttcttgtgggtgag |
21258633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 21254335 - 21254152
Alignment:
| Q |
7 |
cttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatcca |
106 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||| |||||| | |
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| T |
21254335 |
cttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgcgtatgttataaccaccaatcta |
21254237 |
T |
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| Q |
107 |
aacacatg---aaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacg |
188 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
21254236 |
aacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaatcattaacg |
21254152 |
T |
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