View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17628_low_17 (Length: 230)
Name: NF17628_low_17
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 12627505 - 12627316
Alignment:
| Q |
16 |
cagagatgttatcactatcatagctatgaggcaagtccatatcaaaaggttgaatgtcagatttcgccgatacggtctctacatcacagcttaaatcaga |
115 |
Q |
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| T |
12627505 |
cagagatgttatcactatcatagctatgaggcaagtccatatcaaaaggttgaatgtcagatttcaccgatacggtctctacatcacagcttaaaccaga |
12627406 |
T |
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| Q |
116 |
attgctagatccctccatcggagattctgagagtgaactctatgataagaactctacaatgaaaagaaccatgcacatgaaaaacatgat |
205 |
Q |
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| T |
12627405 |
attgctagatccctccatcggagattctgagagtgaactctatgataagaactctacaatgaaaagaaccatgcacatgaaaaacatgat |
12627316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 12621545 - 12621481
Alignment:
| Q |
92 |
ctctacatcacagcttaaatcagaattgctagatccctccatcggagattctgagagtgaactct |
156 |
Q |
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| T |
12621545 |
ctctccatcacaacttaaatctgaattgatagaaccctccatctccgattctgagagtgaactct |
12621481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 42842752 - 42842674
Alignment:
| Q |
100 |
cacagcttaaatcagaattgctagatccctccatcggagattctgagagtgaactctatgataagaactctacaatgaa |
178 |
Q |
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| T |
42842752 |
cacaacttacatcaaaattgccagagtcctccatcagagattctgagaataaactcaatgattagaactctacaatgaa |
42842674 |
T |
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