View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17628_low_2 (Length: 455)
Name: NF17628_low_2
Description: NF17628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17628_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 46236377 - 46236108
Alignment:
| Q |
18 |
ataatcctcgaaaccactacatataacaatttccacccctcctggaattagatcaatcttgacacacttcactacacttgaaggatctgctgataattca |
117 |
Q |
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| T |
46236377 |
ataatcctcgagaccactacatataacaatttccacccctcctggaattagatcaatcttgacacacttcactacacttgaaggatctgctgataattca |
46236278 |
T |
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| Q |
118 |
tttccagtttcaaccctacttgaactaaccatttctttcatcttatctctctttatttcaagttcattaattttctgcttcaaaatttgtacataatttg |
217 |
Q |
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| T |
46236277 |
tttccagtttcaaccctacttgaactaaccatttctttcattttatctctctttatttcaagttcattaattttctgcttcaaaatttgtacataatttg |
46236178 |
T |
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| Q |
218 |
cagcctcacctatgtgatctgatactgaacgcttaccctaaaagcaaagaaagatgttgtgaaaactacg |
287 |
Q |
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| T |
46236177 |
cagcctcacctatgtgatctgatactgaacgcttaccctaaaagcaaagaaagatgttgtgaaaactacg |
46236108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 46236027 - 46235954
Alignment:
| Q |
369 |
gaccttgatgagatcaaaaggaattgaagaacggagtgatgaacatagaatagacatttgcatcctcctttgct |
442 |
Q |
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| T |
46236027 |
gaccttgatgagatcaaaaggaagtgaagaacggagtgatgaacatagaatagacatttgcatcctcctttgct |
46235954 |
T |
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