View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_high_1 (Length: 495)
Name: NF17629_high_1
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 13918970 - 13918494
Alignment:
| Q |
1 |
ccagcctccactttcatgttcatcccccttgttttaataacacccccgggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacgt |
100 |
Q |
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||||||||||| |||||||||||| ||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13918970 |
ccagcctccaccttcatgttcatcacccttgtcttaataacatccactggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacat |
13918871 |
T |
|
| Q |
101 |
gggtcccaaggccatcacgcataacacccttctcaagaatcatctccttgaattgatcatatgatgccagctgtgaagctgtgaccagcatggcgcggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13918870 |
gggtcccaaggccatcacgcataacacccttctcaagaatcatctccttgaattgatcatatgaagccagctgtgaagctgtgaccagcatggcgcggtt |
13918771 |
T |
|
| Q |
201 |
gacagttaatgatgacccgcgccagagactggtcacaccttcctgcttcgccattctagtaatggcgtcgacaacagatttgtagtttctctgctgagcc |
300 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13918770 |
cacagtcaatgatgacccgcgccagagactagtcacaccttcctgcttcgccattctggtaatggcgtcaacaacagatttgtagtttctctgctgagcc |
13918671 |
T |
|
| Q |
301 |
ggtggaagtctcccatcggcttgcattcgaaccatggcaacatcggcaggattaccgatagcagcaccaaccccaccagcaataagtccagcctcgatct |
400 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13918670 |
ggtgggagtctcccatcggcttgcattcgaaccatggcaacatcggcggggttaccgatagcagcaccaaccccaccagcaataagtccagcctcgatct |
13918571 |
T |
|
| Q |
401 |
tgcgaaccagcggcatagtaccaccagcttcacgatctgtccacttgtttttcaaaacctcgtaaagtcccatcctg |
477 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13918570 |
tgcgaaccagcggcatagtgccaccagcttcacgatctgtccacttgtttttcaaaacctcgtaaagtcccatcctg |
13918494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 28830212 - 28829836
Alignment:
| Q |
1 |
ccagcctccactttcatgttcatcccccttgttttaataacacccccgggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacgt |
100 |
Q |
| |
|
||||||||||| ||||| |||||| |||| || ||||| ||| || | |||||||| |||||||| |||||||| || || | |||||| ||| ||| | |
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| T |
28830212 |
ccagcctccaccttcatattcatcaccctagtcttaatcacatccactggattcgatgcaaccgcggccacaaaacctgccgaaaaactcgctaccacat |
28830113 |
T |
|
| Q |
101 |
gggtcccaaggccatcacgcataacacccttctcaagaatcatctccttgaattgatcatatgatgccagctgtgaagctgtgaccagcatggcgcggtt |
200 |
Q |
| |
|
|||||||||| ||||| ||| ||| || | | |||| | ||||| || | |||||| |||||||||||||| || || |||| |||||||||||| |
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| T |
28830112 |
gggtcccaagcccatccttcatccaaccatttttcaaaatcttttccttaaactcatcataggatgccagctgtgatgcggtaaccaacatggcgcggtt |
28830013 |
T |
|
| Q |
201 |
gacagttaatgatgacccgcgccagagactggtcacaccttcctgcttcgccattctagtaatggcgtcgacaacagatttgtagtttctctgctgagcc |
300 |
Q |
| |
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|| || | ||||| |||||||| || || || || || || | |||||||| || | ||||||||||| |||||||| |||||||| || ||| |
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| T |
28830012 |
cactgtcagagatgaaccgcgccataggctagtaactccctcgtctttcgccatcctggagatggcgtcgacgacagatttatagtttcttctttgggcc |
28829913 |
T |
|
| Q |
301 |
ggtggaagtctcccatcggcttgcattcgaaccatggcaacatcggcaggattaccgatagcagcaccaaccccacc |
377 |
Q |
| |
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| ||||||||| |||||||| ||||| | |||||| || ||||| || ||||| |||| ||| || |||| |||||| |
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| T |
28829912 |
gatggaagtcttccatcggcctgcatcctaaccattgccacatcagccggattcccgacagccgcgccaatcccacc |
28829836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 46255010 - 46254950
Alignment:
| Q |
49 |
ggattcgacgcaaccgccgccacaaatcccgctgcaaaactagctgtcacgtgggtcccaa |
109 |
Q |
| |
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|||||||||||||||||||||| ||| ||||| |||||||| ||| |||||||||||||| |
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| T |
46255010 |
ggattcgacgcaaccgccgccaaaaaacccgccgcaaaactcgctaccacgtgggtcccaa |
46254950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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