View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_high_16 (Length: 269)
Name: NF17629_high_16
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 53123108 - 53123361
Alignment:
| Q |
18 |
aattcataagttcgatagatgtgtcctacaaccgataggtatatcaatctatacatgcttttgatgatttgaacaatattcagagggactggaacaaagt |
117 |
Q |
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| T |
53123108 |
aattcataagctcgatagatgtgtcctacaaccgataggtatatcaatctatacatgcttttgatgatttgagcaatattcagagggactggaacaaagg |
53123207 |
T |
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| Q |
118 |
tacaagcaaaaacttggatttccttcgtcatattgataagaagcatgaatagaaaactcgaaaaaggcaattatagactgagaacttacactgcaattct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53123208 |
tacaagcaaaaacttggatttccttcgtcatattgataagaagcatgaatagaaaactcgaaaaaggcaattatagactgagaacttacactgcaattct |
53123307 |
T |
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| Q |
218 |
tggtaactgtg--aagagtgnnnnnnntttaaaagcacaaagaggaaaagaaac |
269 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
53123308 |
tggtaactgtgtgaagagtgaaaaaaatttaaaagcacaaagaggaaaagaaac |
53123361 |
T |
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