View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17629_high_23 (Length: 221)
Name: NF17629_high_23
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 28152555 - 28152370
Alignment:
| Q |
33 |
taatgaatataatatccttatttatcattcgaataatagtacaaaaatacaattatgaagaacc-------------tcaaagtagagctcagcttcccc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28152555 |
taatgaatataatatccttatttatcattcgaataatagtacaaaaatacaattatgaagaaccatacttaagtacctcaaagtagagctcagcttcccc |
28152456 |
T |
|
| Q |
120 |
tgatgtatctgctatgaaaccacccttaagcatagaccaacaattagattcagcaaaaatgacaccacaaaatttaaatccttcat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28152455 |
tgatgtatctgctatgaaaccacccttaagcatagaccaacagttagattccgcaaaaatgacaccacaaaatttaaatccttcat |
28152370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 8024177 - 8024292
Alignment:
| Q |
87 |
atgaagaacctcaaagtagagctcagcttcccctgatgtatctgctatgaaaccacccttaagcatagaccaacaattagattcagcaaaaatgacacca |
186 |
Q |
| |
|
|||||| |||||||| |||||||||||| | |||| |||||||||||| | ||||||||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
8024177 |
atgaagtacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattaggctcagcaaaaatagcacca |
8024276 |
T |
|
| Q |
187 |
caaaatttaaatcctt |
202 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
8024277 |
ccaaatttaaatcctt |
8024292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 21544596 - 21544706
Alignment:
| Q |
94 |
acctcaaagtagagctcagcttcccctgatgtatctgctatgaaaccacccttaagcatagaccaacaattagattcagcaaaaatgacaccacaaaatt |
193 |
Q |
| |
|
|||||||| |||||||||||| | ||| || || ||| ||| ||||||||||||||||||||||||||| | |||||| ||||| |||||| ||||| |
|
|
| T |
21544596 |
acctcaaaatagagctcagctacttctgttgcgtccgctgtgagaccacccttaagcatagaccaacaattcggctcagcataaatggcaccaccaaatt |
21544695 |
T |
|
| Q |
194 |
taaatccttca |
204 |
Q |
| |
|
||||||||||| |
|
|
| T |
21544696 |
taaatccttca |
21544706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University