View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_high_3 (Length: 393)
Name: NF17629_high_3
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 380
Target Start/End: Complemental strand, 8478515 - 8478139
Alignment:
| Q |
4 |
tcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaacggaattcctcctca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478515 |
tcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaacggaattcctcctca |
8478416 |
T |
|
| Q |
104 |
acaaaggctactccgtccacggcctaattcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtcgatccacacaacgctcacaaagc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478415 |
acaaaggctactccgtccacggcctaattcgccgttcttcaaacttcaacacacaacgaatcgatcacatctatgtcgatccacacaacgctcacaaagc |
8478316 |
T |
|
| Q |
204 |
tcatatgaagcttcacttcgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacgaagtttacaatcacgctgcacag |
303 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8478315 |
tcatatgaagcttcactacgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacgaagtttacaatctcgctgcacag |
8478216 |
T |
|
| Q |
304 |
tcacacgtcgcggtttcgtttgagattcctgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
380 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8478215 |
tcacacgtcgcggtttcgtttgagattcccgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
8478139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 8486985 - 8486607
Alignment:
| Q |
2 |
catcaacaacaaacggcgacaccactcctccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaacggaattcctcct |
101 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8486985 |
catcaacaacaaacggcgacaccactccaccaccgcggaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaacagaattcctcct |
8486886 |
T |
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| Q |
102 |
caacaaaggctactccgtccacggcctaattcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtcgatccacacaacgctcacaaa |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
8486885 |
caacaaaggctactccgtccacggcctaattcgtcgttcgtcaaacttcaacacacaacgaattgatcacatctatgtcgatccacacgacgctcacaaa |
8486786 |
T |
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| Q |
202 |
gctcatatgaagcttcacttcgccgatctctccgacgcttcctctctccgtcgctggctcgacactattctccccgacgaagtttacaatcacgctgcac |
301 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| | ||| |||| |
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| T |
8486785 |
gctcatatgaagcttcactatgccgatctctccgacgcttccgctctccgtcgctggctcgacactatcctccctgacgaagtttacaacctcgccgcac |
8486686 |
T |
|
| Q |
302 |
agtcacacgtcgcggtttcgtttgagattcctgattacactgctgatgttgttgctacaggtgctctccgtcttcttga |
380 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
8486685 |
agtctcatgtcgcggtttcgtttgagattcctgattacactgcagatgttgttgctactggtgctctccgtcttcttga |
8486607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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