View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17629_high_4 (Length: 386)

Name: NF17629_high_4
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17629_high_4
NF17629_high_4
[»] chr6 (20 HSPs)
chr6 (9-367)||(5432011-5432369)
chr6 (60-363)||(5175474-5175774)
chr6 (60-363)||(5277301-5277601)
chr6 (162-367)||(5094645-5094850)
chr6 (200-303)||(5382316-5382419)
chr6 (160-320)||(5424404-5424564)
chr6 (200-320)||(5104103-5104223)
chr6 (162-358)||(5158694-5158890)
chr6 (259-320)||(5369111-5369172)
chr6 (259-309)||(5075021-5075071)
chr6 (262-309)||(5068367-5068414)
chr6 (263-358)||(5261440-5261535)
chr6 (259-320)||(5349026-5349089)
chr6 (262-309)||(5691404-5691451)
chr6 (215-309)||(5342356-5342450)
chr6 (263-304)||(5133199-5133240)
chr6 (260-304)||(5148250-5148294)
chr6 (267-358)||(5285443-5285534)
chr6 (214-298)||(5183197-5183281)
chr6 (214-358)||(5395656-5395800)
[»] chr4 (8 HSPs)
chr4 (158-320)||(4351880-4352042)
chr4 (200-358)||(4359023-4359181)
chr4 (260-357)||(4135073-4135170)
chr4 (158-358)||(4322291-4322491)
chr4 (200-358)||(4125671-4125829)
chr4 (214-320)||(4343592-4343698)
chr4 (158-358)||(4334165-4334365)
chr4 (269-309)||(6499634-6499674)
[»] chr5 (1 HSPs)
chr5 (214-304)||(8876470-8876560)
[»] chr7 (1 HSPs)
chr7 (168-309)||(36215091-36215232)
[»] chr2 (1 HSPs)
chr2 (267-358)||(22585619-22585710)
[»] scaffold0294 (1 HSPs)
scaffold0294 (230-303)||(9929-10002)
[»] chr8 (2 HSPs)
chr8 (263-311)||(3313693-3313741)
chr8 (263-311)||(7165853-7165901)


Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 5432369 - 5432011
Alignment:
Q  9 cagagaccatgaagcacaaaatggtacatagccaaattattgatgttctagtgataatcaacaaaagaaatggattttaatcatagatgaatatatgtta 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5432369 cagaaaccatgaagcacaaaatggtacatagccaaattattgatgttctagtgataatcaacaaaagaaatggattttaatcatagatgaatatatgtta 5432270  T
Q  109 gtttttcttctttaagatttacatattttagataaagaataaaataaaggtatatgaagttcttacagtttgtcttgctaatacaccatcaacatcctca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5432269 gtttttcttctttaagatttacatattttagataaagaataaaataaaggtatatgaagttcttacagtttgtcttgctaatacaccatcaacatcctca 5432170  T
Q  209 ggaagccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgt 308  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5432169 ggaagccacaacctgctatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgt 5432070  T
Q  309 tatcatcatcaatatatactaagctacgctcaacaaggactcttattccatcttcagca 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5432069 tatcatcatcaatatatactaagctacgctcaacaaggactcttattccatcttcagca 5432011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 60 - 363
Target Start/End: Complemental strand, 5175774 - 5175474
Alignment:
Q  60 tgataatcaacaaaagaaatggattttaatcatagatgaatatatgttagtttttcttctttaagatttacatattttagataaagaataaaataaaggt 159  Q
    ||||||| ||||||| ||||| ||  ||||||| ||   | |||||||||||||||||||||||| |||| |||||||| | | | ||||   |||||||    
T  5175774 tgataattaacaaaacaaatgaatgctaatcattgacacaaatatgttagtttttcttctttaagctttagatattttaaacacaaaata---taaaggt 5175678  T
Q  160 atatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaa 259  Q
    ||| ||||||||||| ||||||| |||||| ||| |||||||||||||| ||| ||||||||||| | |||||||||| ||| || |||| |||||||||    
T  5175677 ataagaagttcttacggtttgtcctgctaacacatcatcaacatcctcaagaaaccacaacctgctacgctcctcaggctccattcgtggtttattacaa 5175578  T
Q  260 atgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattccat 359  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||    ||||||||| |||||||| ||||| ||||||||||    
T  5175577 atgatttctcttcccatatcccgcaacaaattatgcattccaagcttgtttttattatcaaccgttactaagcttcgctcaaccaggacacttattccat 5175478  T
Q  360 cttc 363  Q
    ||||    
T  5175477 cttc 5175474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 60 - 363
Target Start/End: Complemental strand, 5277601 - 5277301
Alignment:
Q  60 tgataatcaacaaaagaaatggattttaatcatagatgaatatatgttagtttttcttctttaagatttacatattttagataaagaataaaataaaggt 159  Q
    ||||||| ||||||| ||||| ||  ||||||| ||   | |||||||||||||||||||||||| |||| |||||||| | | | ||||   |||||||    
T  5277601 tgataattaacaaaacaaatgaatgctaatcattgacacaaatatgttagtttttcttctttaagctttagatattttaaacacaaaata---taaaggt 5277505  T
Q  160 atatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaa 259  Q
    ||| |||||| |||| ||||||| | |||| ||| |||||||||||||| ||| ||||||||||| | |||||||||| ||| || |||| |||||||||    
T  5277504 ataagaagttattacggtttgtcctactaacacatcatcaacatcctcaagaaaccacaacctgctacgctcctcaggctccattcgtggtttattacaa 5277405  T
Q  260 atgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattccat 359  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||    ||||||||| |||||||||||||| ||||||||||    
T  5277404 atgatttctcttcccatatcccgcaacaaattatgcattccaagcttgtttttattatcaaccgttactaagcttcgctcaacaaggacacttattccat 5277305  T
Q  360 cttc 363  Q
    ||||    
T  5277304 cttc 5277301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 162 - 367
Target Start/End: Complemental strand, 5094850 - 5094645
Alignment:
Q  162 atgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaaat 261  Q
    ||||||||||||||||||||  || |||||||  |   ||||| ||| ||| ||||||||||| | |||||||  | |||| |||||  || | || |||    
T  5094850 atgaagttcttacagtttgttctgataatacatgaagcacatcatcatgaaaccacaacctgcaacgctcctcgagctcctctggtgatttctcacgaat 5094751  T
Q  262 gatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattccatct 361  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||| |  ||| |  ||||||||||||||||  |||||||||  |    
T  5094750 gatttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttatcatcaacagttacaagactacgctcaacaaggatacttattccaatt 5094651  T
Q  362 tcagca 367  Q
    ||||||    
T  5094650 tcagca 5094645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 5382419 - 5382316
Alignment:
Q  200 acatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattc 299  Q
    ||||||||| ||| ||| ||||||| | |||||||||||||||||||||  || | || |||||||||||||||||||||||  ||||||||||||||||    
T  5382419 acatcctcatgaaaccataacctgctacgctcctcaggatcctttggtgatttttcacgaatgatttctcttcccatatcccttaacaaatcatgcattc 5382320  T
Q  300 caag 303  Q
    ||||    
T  5382319 caag 5382316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 320
Target Start/End: Complemental strand, 5424564 - 5424404
Alignment:
Q  160 atatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaa 259  Q
    |||||||||||||||||||||   || |||||||  |   ||||||||| ||| ||||||||||| | |||||||  | || | |||||  ||   || |    
T  5424564 atatgaagttcttacagtttgatctgataatacatgaagcacatcctcatgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacga 5424465  T
Q  260 atgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaa 320  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||    
T  5424464 atgatttctcttcccatatctcgcaacaaatcatgcattccaagtttgttattatcatcaa 5424404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 320
Target Start/End: Original strand, 5104103 - 5104223
Alignment:
Q  200 acatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattc 299  Q
    ||||| ||| ||| ||||||||||| | |||||||  | |||| |||||  || | || ||||||||||||||||||||| |||||||||||||||||||    
T  5104103 acatcgtcatgaaaccacaacctgcaacgctcctcgagctcctctggtgatttctcacgaatgatttctcttcccatatctcgcaacaaatcatgcattc 5104202  T
Q  300 caagcttgttatcatcatcaa 320  Q
    |||| ||||| | ||||||||    
T  5104203 caagtttgttcttatcatcaa 5104223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 358
Target Start/End: Original strand, 5158694 - 5158890
Alignment:
Q  162 atgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaaat 261  Q
    ||||||||||||||||||||  || |||||||  |   ||||| ||| ||| ||||||||||| | |||||||    |||| |||||  || | || |||    
T  5158694 atgaagttcttacagtttgttctgataatacatgaagcacatcgtcatgaaaccacaacctgcaacgctcctcgatctcctctggtgatttctcacgaat 5158793  T
Q  262 gatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcca 358  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||| |   || |  ||||||||||||||||  |||||||||    
T  5158794 gatttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttaccatcaacagtaacaagactacgctcaacaaggatgcttattcca 5158890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 5369172 - 5369111
Alignment:
Q  259 aatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaa 320  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||    
T  5369172 aatgatttctcttcccatatctcgcaacaaatcatgcattccaagtttgttcttatcatcaa 5369111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 5075021 - 5075071
Alignment:
Q  259 aatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgtt 309  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  5075021 aatgatttctcttcccatatcacgcagcaaatcatgcattccaagcttgtt 5075071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 5068367 - 5068414
Alignment:
Q  262 gatttctcttcccatatcccgcaacaaatcatgcattccaagcttgtt 309  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5068367 gatttctcttcccatatctcgcaacaaatcatgcattccaagtttgtt 5068414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 5261440 - 5261535
Alignment:
Q  263 atttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcca 358  Q
    ||||||||||||||||| ||||||||| |||||||||||||| |||| | |||||||| |   || | ||| | |||||||||||| |||||||||    
T  5261440 atttctcttcccatatctcgcaacaaaccatgcattccaagcatgttcttatcatcaacactcacaaggcttctctcaacaaggacgcttattcca 5261535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 5349089 - 5349026
Alignment:
Q  259 aatgatttctcttcccatatcccgcaacaaatc--atgcattccaagcttgttatcatcatcaa 320  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||| ||||| | ||||||||    
T  5349089 aatgatttctcttcccatatctcgcaacaaatcatatgcattccaagtttgttcttatcatcaa 5349026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 5691404 - 5691451
Alignment:
Q  262 gatttctcttcccatatcccgcaacaaatcatgcattccaagcttgtt 309  Q
    |||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  5691404 gatttctcttcccatatctcgcaacaaatcatgcattctaagcctgtt 5691451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 309
Target Start/End: Complemental strand, 5342450 - 5342356
Alignment:
Q  215 cacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgtt 309  Q
    |||||||||| | ||||| || | ||||||||||  || | || || |||||||||||||||||| |||| |||||| ||||||||||| |||||    
T  5342450 cacaacctgctacgctccccaagctcctttggtgatttctcacgaacgatttctcttcccatatctcgcagcaaatcgtgcattccaagtttgtt 5342356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 5133199 - 5133240
Alignment:
Q  263 atttctcttcccatatcccgcaacaaatcatgcattccaagc 304  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  5133199 atttctcttcccatatctctcaacaaatcatgcattccaagc 5133240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 5148250 - 5148294
Alignment:
Q  260 atgatttctcttcccatatcccgcaacaaatcatgcattccaagc 304  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  5148250 atgatttctcttgccatgtctcgcaacaaatcatgcattccaagc 5148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 5285443 - 5285534
Alignment:
Q  267 ctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcca 358  Q
    ||||||||||||| |||| |||| |||||||||||||| |||| | |||||||| |   || | ||| | |||||||||||| |||||||||    
T  5285443 ctcttcccatatctcgcagcaaaccatgcattccaagcatgttcttatcatcaacactcacaaggcttctctcaacaaggacgcttattcca 5285534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 5183197 - 5183281
Alignment:
Q  214 ccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcatt 298  Q
    ||||||||||| | |||||||||| || |||||||  || | || || |||||||||||||||||| |  | |||||||||||||    
T  5183197 ccacaacctgctacgctcctcaggctcttttggtgacttctcacgaacgatttctcttcccatatctcttagcaaatcatgcatt 5183281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 358
Target Start/End: Complemental strand, 5395800 - 5395656
Alignment:
Q  214 ccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatca 313  Q
    ||||||||||| | ||||||| || || |||||||  || | || || |||||||||||||||||| |  | ||||||||||||| ||||  ||||   |    
T  5395800 ccacaacctgctacgctcctcgggctcttttggtgacttctcacgaacgatttctcttcccatatctcttagcaaatcatgcattgcaagtctgttccta 5395701  T
Q  314 tcatcaatatatactaagctacgctcaacaaggactcttattcca 358  Q
    ||||||| |  ||| | ||| |||||||||||||| |||| ||||    
T  5395700 tcatcaacagttacaaggcttcgctcaacaaggacacttactcca 5395656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 320
Target Start/End: Complemental strand, 4352042 - 4351880
Alignment:
Q  158 gtatatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattac 257  Q
    |||||||||||||||||||| ||| |||  |||||| ||   |||||| |  ||| ||||||||| | | | |||||||| ||||||||||  || | ||    
T  4352042 gtatatgaagttcttacagtatgttttgacaatacatcaagcacatccccgtgaaaccacaacctactacgttcctcaggctcctttggtgatttctcac 4351943  T
Q  258 aaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaa 320  Q
     ||||||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||||||    
T  4351942 gaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgtttttatcatcaa 4351880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 358
Target Start/End: Complemental strand, 4359181 - 4359023
Alignment:
Q  200 acatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattc 299  Q
    ||||||||| ||| ||||| ||| | ||| |||||||| ||||||||||  || | || ||||||||||||||||||||| || | |||||||||||| |    
T  4359181 acatcctcatgaaaccacagcctactatgttcctcaggctcctttggtgatttctcacgaatgatttctcttcccatatctcggagcaaatcatgcatgc 4359082  T
Q  300 caagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcca 358  Q
    |||||||||| | ||||||||    ||| | ||| | |||||||||||| |||||||||    
T  4359081 caagcttgttcttatcatcaaccgttacaaggcttctctcaacaaggacacttattcca 4359023  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 4135073 - 4135170
Alignment:
Q  260 atgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcc 357  Q
    ||||| |||||||||||||| || | |||||||||||||||||||||||| | ||||||||||  ||| | ||| |||||||||||||| ||||||||    
T  4135073 atgatctctcttcccatatctcgtagcaaatcatgcattccaagcttgtttttatcatcaatagttacaaggcttcgctcaacaaggacacttattcc 4135170  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 358
Target Start/End: Original strand, 4322291 - 4322491
Alignment:
Q  158 gtatatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattac 257  Q
    |||||||||||||||||||| |||  ||  |||||| ||   ||||| ||| ||| ||||||||| | | | |||||||| ||| ||||||  || | ||    
T  4322291 gtatatgaagttcttacagtatgttctgacaatacatcaagcacatcatcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 4322390  T
Q  258 aaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcc 357  Q
     ||||||||| ||||||||||| |||| |||||||||||| ||||||||||| | ||||||||    ||| | ||| | |||||||||||| ||||||||    
T  4322391 gaatgatttcccttcccatatctcgcagcaaatcatgcatgccaagcttgttcttatcatcaaccgttacaaggcttctctcaacaaggacacttattcc 4322490  T
Q  358 a 358  Q
    |    
T  4322491 a 4322491  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 358
Target Start/End: Original strand, 4125671 - 4125829
Alignment:
Q  200 acatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattc 299  Q
    ||||||||| ||  ||||||||| | | | |||||||| ||| ||||||  || | || ||||||||||||||||||||| |||| |||||||||||| |    
T  4125671 acatcctcatgataccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgcagcaaatcatgcatgc 4125770  T
Q  300 caagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcca 358  Q
    |||||||||| | ||||||||    ||| | ||| || ||||||||||| |||||||||    
T  4125771 caagcttgttcttatcatcaactgttacaaggcttcgttcaacaaggacacttattcca 4125829  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 320
Target Start/End: Complemental strand, 4343698 - 4343592
Alignment:
Q  214 ccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatca 313  Q
    ||||||||| | ||| |||||||| |||||||| |  || | || ||||||||||||||||||||| |||| |||||||||||| ||||||||||| | |    
T  4343698 ccacaacctactatgttcctcaggctcctttggcgatttctcacgaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgttctta 4343599  T
Q  314 tcatcaa 320  Q
    |||||||    
T  4343598 tcatcaa 4343592  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 358
Target Start/End: Complemental strand, 4334365 - 4334165
Alignment:
Q  158 gtatatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattac 257  Q
    ||||| |||||||||||||| |||  ||  |||||| ||   ||||||||| ||| ||||||||| | | | |||||||| ||| ||||||  || | ||    
T  4334365 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 4334266  T
Q  258 aaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcc 357  Q
     ||||||||||||||||||||| || | |||||||||||| ||||||||||| | | |||| |    ||| | ||| |||||||||||||| ||||||||    
T  4334265 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttaccatcgaccgttacaaggcttcgctcaacaaggacacttattcc 4334166  T
Q  358 a 358  Q
    |    
T  4334165 a 4334165  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 6499634 - 6499674
Alignment:
Q  269 cttcccatatcccgcaacaaatcatgcattccaagcttgtt 309  Q
    ||||||||||| | ||||||||||||||||| |||||||||    
T  6499634 cttcccatatctctcaacaaatcatgcattctaagcttgtt 6499674  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 8876560 - 8876470
Alignment:
Q  214 ccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattccaagc 304  Q
    ||||||||||| | |||||||||||||||||||||  || | || |||||||||||||||||||||   ||||||||||||||||||||||    
T  8876560 ccacaacctgctacgctcctcaggatcctttggtgatttctcacgaatgatttctcttcccatatctgtcaacaaatcatgcattccaagc 8876470  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 36215091 - 36215232
Alignment:
Q  168 ttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgccatgctcctcaggatcctttggtggattattacaaatgatttc 267  Q
    ||||||||||||||  || ||||||| || | || |||| |  || ||||||||||| | |||||||| | ||||||||||  || | || |||||| ||    
T  36215091 ttcttacagtttgttctgataatacatcagccacgtccttattaaaccacaacctgctacgctcctcaagctcctttggtgatttctcacgaatgatctc 36215190  T
Q  268 tcttcccatatcccgcaacaaatcatgcattccaagcttgtt 309  Q
    |||||||||||| |||| ||||||||||||||||||| ||||    
T  36215191 tcttcccatatctcgcagcaaatcatgcattccaagcctgtt 36215232  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 22585619 - 22585710
Alignment:
Q  267 ctcttcccatatcccgcaacaaatcatgcattccaagcttgttatcatcatcaatatatactaagctacgctcaacaaggactcttattcca 358  Q
    ||||||||||||| |||| ||||||||||||||||||| |||| | |||||||| |   || | ||| | |||||||||||| |||||||||    
T  22585619 ctcttcccatatctcgcagcaaatcatgcattccaagcctgttcttatcatcaacactcacaaggcttctctcaacaaggacgcttattcca 22585710  T

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Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 9929 - 10002
Alignment:
Q  230 tcctcaggatcctttggtggattattacaaatgatttctcttcccatatcccgcaacaaatcatgcattccaag 303  Q
    |||||||||||| ||||||  || | || ||||||||| ||||||||||| || || |||||||||||||||||    
T  9929 tcctcaggatcccttggtgatttttcacgaatgatttcccttcccatatctcgtaataaatcatgcattccaag 10002  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 3313741 - 3313693
Alignment:
Q  263 atttctcttcccatatcccgcaacaaatcatgcattccaagcttgttat 311  Q
    ||||||| |||||| || ||||  |||||||||||||||||||||||||    
T  3313741 atttctcgtcccatgtctcgcagtaaatcatgcattccaagcttgttat 3313693  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 7165853 - 7165901
Alignment:
Q  263 atttctcttcccatatcccgcaacaaatcatgcattccaagcttgttat 311  Q
    |||||||||||||| || |  | ||||||||||||||||||||||||||    
T  7165853 atttctcttcccatgtctctaagcaaatcatgcattccaagcttgttat 7165901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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