View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_high_5 (Length: 379)
Name: NF17629_high_5
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 56402143 - 56402493
Alignment:
| Q |
11 |
cacagaagtgagacttagatccaaaggtattgattgtggaacaacttggccttttggtgtgattcacatttggcaaagggagctcaactcagaaaaagtg |
110 |
Q |
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| T |
56402143 |
cacagaagtgagacttagatccaaaggtattgattgtggaacaacttggccttttggtgtgattcacatttggcaaagggagctcaactcagaaaaagtg |
56402242 |
T |
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| Q |
111 |
gtcattgaatcagatgcaattatgcaaaagttgttgttccgcattcatggatccactactgatttttaagaatatggaatctgttctagcaaacacggca |
210 |
Q |
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| T |
56402243 |
gtcattgaatcagatgcaattatgcaaaagttgttgttctgcattcatggatccactactgatttttaagaatatggaatctgttctagcaaacacggca |
56402342 |
T |
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| Q |
211 |
accactatgggtttccattaagttattattctcctctacatcatgttttaattgtgaagatctagatagattcagtttctttagcaggtccatgcgtatg |
310 |
Q |
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| T |
56402343 |
accactatgggtttccattaagttattattctcctctacatcatgttttaattgtgaagatctagatagattcagtttctttagcaggtccatgcgtatg |
56402442 |
T |
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| Q |
311 |
ctttatgtattttagatagcgtgatttgttaatgatactaagggctagatg |
361 |
Q |
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| T |
56402443 |
ctttatgtattttagatagcgtgatttgttaatgataccaagggctagatg |
56402493 |
T |
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