View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_high_8 (Length: 354)
Name: NF17629_high_8
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 36050959 - 36051284
Alignment:
| Q |
18 |
atgatagtggctgcattagctatgcgtggtggtgctctcagatggtggttgtggtggtctcgccgtcatccgcagtcaaattgggacacctttaccactg |
117 |
Q |
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| T |
36050959 |
atgatagtggctgcattagctatgcgtggtggtgctctcagatggtggttgtggtggtctcgccgtcatccgcagtcaaattgggacacctttaccactg |
36051058 |
T |
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| Q |
118 |
atctcttatggcgctttaagcctgaatggcggcatctcttgcctgtgttagatgaagaaacggaggaaacatgtgaatcctcaaagttggaggtga---a |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
36051059 |
atctcttatggcgctttaagcctgaatggcggcatctcttgcctgtgttagatgaagaaacggaggaagcatgtgaatcctcaaagttggaggtgaagca |
36051158 |
T |
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| Q |
215 |
gccttcccgagtttccgattgtgttgttgatctcgtactagacataccaggtgaacacaatcaagatcttccaccatgctcaaagcttgttgagaagccc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051159 |
gccttcccgagtttccgattgtgttgttgatctcgtactagacataccaggtgaacacaatcaagatcttccaccatgctcaaagcttgttgagaagccc |
36051258 |
T |
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| Q |
315 |
tccatcactcacgattatgttgattc |
340 |
Q |
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| T |
36051259 |
tccatcactcacgattatgttgattc |
36051284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 44762253 - 44762430
Alignment:
| Q |
18 |
atgatagtggctgcattagctatgcgtggtggtgctctcagatggtggttgtggtggtctcgccgtcatccgcagtcaaattgggacacctttaccactg |
117 |
Q |
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| T |
44762253 |
atgatggtggctgcactggccatgcgcggtgaagctctcaaatggtggctatggtggtctcaccgtcactcacgatccaattgggacacttttaccactg |
44762352 |
T |
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| Q |
118 |
atctcttatggcgctttaagcctgaatggcggcatctcttgcctgtgttagatgaagaaacggaggaaacatgtgaat |
195 |
Q |
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||| || ||||| || |||| ||||||||| |||||||| || |||||||| || ||||| |||||| | ||||||| |
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| T |
44762353 |
ctcttttgtggcgtttcaagcatgaatggcgtcatctcttaccggtgttagaggaggaaacagaggaagcttgtgaat |
44762430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 30453024 - 30453113
Alignment:
| Q |
59 |
atggtggttgtggtggtctcgccgtcatccgcagtcaaattgggacacctttaccactgatctcttatggcgctttaagcctgaatggcg |
148 |
Q |
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|||||||||||||||||| | |||||| ||||| |||||||||||||| || ||||| | || || |||||||| ||||| |||||||| |
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| T |
30453024 |
atggtggttgtggtggtcgccccgtcacccgcaatcaaattgggacacattcaccacggcactgttttggcgcttcaagccggaatggcg |
30453113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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