View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17629_low_10 (Length: 330)
Name: NF17629_low_10
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 20716806 - 20716513
Alignment:
| Q |
20 |
atcaggaataaaaattgtggctgatttagaatgttaatttacttttatctattgaaaataatttgtgctaatttcgtgggttgttaatgtatgaagggaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20716806 |
atcaggaataaaaattgtggctgatttagaatgttaatttacttttatctattgaaaataatttgtgctaatttcgtgggttgttaatgtatgaagggaa |
20716707 |
T |
|
| Q |
120 |
ccaagtaattcttgataattgttaagcaccgtaattgtatcctagaaggtgtattttcacatgcttaacatgatggctgatttggaaaactcctgacggc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20716706 |
ccaagtaattcttgataattgttaagcaccgtgattgtatcctagaaggtgtattttcacatgcttaacatgatggctgatttggaaaactcctgacggc |
20716607 |
T |
|
| Q |
220 |
cacctggttgtcagaaagccatagaaagttgtaactttttattttgtagtaaagtt---ttataaatgattcatagtttaatcacacttccacctt |
312 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20716606 |
caccaggttgtcagaaagccataaaaagttataactttttattttgtagtaaagttgtgttataaatg--tcatagtttaatcacacttccacctt |
20716513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 35294420 - 35294491
Alignment:
| Q |
54 |
taatttacttttatctattgaaaataatttgtgctaatttcgtgggttgttaatgtatgaagggaaccaagt |
125 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||||||||||||| | |||||| || |||||||| |||| |
|
|
| T |
35294420 |
taattttcttttatctgttgaaaataatttgttctaatttcgtgggatattaatgaattaagggaacaaagt |
35294491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 624568 - 624540
Alignment:
| Q |
166 |
aggtgtattttcacatgcttaacatgatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
624568 |
aggtgtattttcacatgcttaacatgatg |
624540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University