View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_low_12 (Length: 305)
Name: NF17629_low_12
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 42927196 - 42926925
Alignment:
| Q |
16 |
atgaacaaacaatgaacgaaaaaatttgctctcgtttttaatatggatgctggttattgtgatgttgctgtcattgctacagaaaaagggaaacttcgaa |
115 |
Q |
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| T |
42927196 |
atgaacaaacaatgaacgaaaaaagttgctctcgtttttaatatggatgctggttattgtgatgttgctgtcattgctacagaaaaagggaaacttcgaa |
42927097 |
T |
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| Q |
116 |
taaaagccctgacaggaagtcctattggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaagaaacgtgt |
215 |
Q |
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| T |
42927096 |
taaaagccctgacaggaagtcctattggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaagaaacgtgt |
42926997 |
T |
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| Q |
216 |
tcacacgaagacagagaaattaaattgatggctcgagttcgaaatacagtccatgaagtgattacccaactttc |
289 |
Q |
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| T |
42926996 |
tcacacgaagac--agaaattaaattgatggctcgagttcgaaatacagtccatgaattgattacccaactttc |
42926925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 41 - 208
Target Start/End: Complemental strand, 44728168 - 44728001
Alignment:
| Q |
41 |
ttgctctcgtttttaatatggatgctggttattgtgatgttgctgtcattgctacagaaaaagggaaacttcgaataaaagccctgacaggaagtcctat |
140 |
Q |
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| T |
44728168 |
ttgctctgattttcaatatggacgcgggttattgtgatgttgctattattgcaacagaaaaaggaaaacgccaaataaaagcgttggcaggaagtgctat |
44728069 |
T |
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| Q |
141 |
tggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaaga |
208 |
Q |
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| T |
44728068 |
tggtggagaagatttgcttggaaatatgatgtgtcatctctttcccgattacgaaaatatattcaaga |
44728001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 47842748 - 47842917
Alignment:
| Q |
43 |
gctctcgtttttaatatggatgctggttattgtgatgttgctgtca---ttgctacagaaaaagggaaacttcgaataaaagccctgacaggaagtccta |
139 |
Q |
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| T |
47842748 |
gctctcattttcaatatggatttcggttattgtgatgttgctgtgactgttgctacagcagaaggagaatgcagaatgaaagctttggcaggaagttcta |
47842847 |
T |
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| Q |
140 |
ttggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaagaa |
209 |
Q |
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| T |
47842848 |
gtggtggagaagacttgcttgtgaatatgatacgttatctcttaccagattctgaaaatatattcaagaa |
47842917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 807892 - 808058
Alignment:
| Q |
41 |
ttgctctcgtttttaatatggatgctggttattgtgatgttgctgtcattgctacagaaaaagggaaacttcgaataaaagccctgacaggaagtcctat |
140 |
Q |
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|||||||| |||| ||||||| |||||||||||||||||||||||| | |||||| | || | || ||||||||| || |||||||| | || |
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| T |
807892 |
ttgctctcattttcaatatgggtgctggttattgtgatgttgctgtgactgctaccgctgggggagtatctcagataaaagccttggcaggaagtaccat |
807991 |
T |
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| Q |
141 |
tggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaag |
207 |
Q |
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| T |
807992 |
cggtggagaagatttgcttcagaatatgatgcgccatctcttaccagattctgaaaatatattcaag |
808058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 39241540 - 39241708
Alignment:
| Q |
41 |
ttgctctcgtttttaatatggatgctggttattgtgatgttgctgtcattgctacagaaaaagggaaacttcga-ataaaagccctgacaggaagtccta |
139 |
Q |
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| T |
39241540 |
ttgctctcattttcaatatgggtgctggttattgtgatgttgctgtgactgctacggctgga-ggagtatccgagataaaagctgtggcaggaagtacca |
39241638 |
T |
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| Q |
140 |
ttggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaagaa |
209 |
Q |
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| T |
39241639 |
tcggtggagaggacttgcttcagaatatgatgtgtcatctcttaccagattctgaaaacatattcaagaa |
39241708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 21354215 - 21354118
Alignment:
| Q |
111 |
tcgaataaaagccctgacaggaagtcctattggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaaga |
208 |
Q |
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| T |
21354215 |
tcgaataaaatcgttgacaggaagtactattgatggagaagtctttcaaggaaatatgatgcgtcatctctttcctaattctgaaaatatattcaaga |
21354118 |
T |
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