View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17629_low_13 (Length: 292)

Name: NF17629_low_13
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17629_low_13
NF17629_low_13
[»] chr2 (13 HSPs)
chr2 (167-272)||(35446784-35446888)
chr2 (18-125)||(35446635-35446742)
chr2 (168-272)||(45727093-45727195)
chr2 (61-127)||(45727239-45727305)
chr2 (188-264)||(17450749-17450824)
chr2 (188-272)||(33648337-33648420)
chr2 (167-269)||(1631634-1631733)
chr2 (188-269)||(42288031-42288111)
chr2 (188-272)||(7451281-7451366)
chr2 (58-118)||(29868181-29868239)
chr2 (60-118)||(11690800-11690856)
chr2 (76-126)||(1631538-1631588)
chr2 (59-118)||(42362658-42362714)
[»] chr4 (30 HSPs)
chr4 (167-272)||(41639590-41639694)
chr4 (168-272)||(40632609-40632713)
chr4 (167-269)||(26364404-26364505)
chr4 (168-272)||(379545-379649)
chr4 (168-272)||(50673747-50673851)
chr4 (167-272)||(8648303-8648411)
chr4 (180-271)||(8665573-8665663)
chr4 (168-272)||(35662605-35662709)
chr4 (188-272)||(6656120-6656203)
chr4 (188-272)||(12073557-12073640)
chr4 (167-246)||(46703739-46703817)
chr4 (188-266)||(55085362-55085439)
chr4 (188-270)||(41964582-41964661)
chr4 (188-264)||(27416886-27416961)
chr4 (197-272)||(46703666-46703740)
chr4 (192-269)||(54883188-54883265)
chr4 (188-253)||(26699362-26699426)
chr4 (60-126)||(50262487-50262551)
chr4 (58-127)||(41639736-41639803)
chr4 (188-272)||(33990010-33990093)
chr4 (167-250)||(50262596-50262678)
chr4 (59-127)||(40632757-40632826)
chr4 (73-127)||(2210030-2210082)
chr4 (188-250)||(2209905-2209966)
chr4 (58-118)||(26175434-26175492)
chr4 (60-101)||(36994857-36994898)
chr4 (189-269)||(12119708-12119791)
chr4 (57-118)||(48893440-48893498)
chr4 (60-101)||(12739353-12739394)
chr4 (60-101)||(12743728-12743769)
[»] scaffold0466 (2 HSPs)
scaffold0466 (167-272)||(7491-7596)
scaffold0466 (74-127)||(7636-7687)
[»] chr8 (15 HSPs)
chr8 (168-272)||(4283688-4283792)
chr8 (170-272)||(42434893-42434995)
chr8 (185-269)||(3772359-3772442)
chr8 (188-272)||(40328940-40329023)
chr8 (168-272)||(18655564-18655671)
chr8 (183-272)||(2999718-2999806)
chr8 (188-264)||(40221917-40221992)
chr8 (188-272)||(11384149-11384232)
chr8 (188-269)||(10930118-10930199)
chr8 (58-118)||(4743025-4743083)
chr8 (74-127)||(42434794-42434847)
chr8 (60-113)||(4283819-4283872)
chr8 (64-118)||(3303474-3303526)
chr8 (60-118)||(15213099-15213155)
chr8 (197-272)||(10240288-10240363)
[»] chr1 (28 HSPs)
chr1 (167-272)||(37168462-37168566)
chr1 (167-272)||(7482130-7482234)
chr1 (168-272)||(13548899-13549004)
chr1 (167-262)||(34603737-34603831)
chr1 (169-272)||(37876667-37876770)
chr1 (168-272)||(31925606-31925711)
chr1 (168-272)||(11348862-11348969)
chr1 (198-272)||(13547020-13547093)
chr1 (168-272)||(47255236-47255343)
chr1 (60-126)||(13548792-13548859)
chr1 (170-272)||(29136412-29136514)
chr1 (58-127)||(13546884-13546953)
chr1 (192-253)||(19754677-19754737)
chr1 (62-127)||(37032860-37032925)
chr1 (188-272)||(47115337-47115420)
chr1 (60-126)||(11349013-11349080)
chr1 (188-253)||(19752866-19752930)
chr1 (60-101)||(19752991-19753032)
chr1 (188-272)||(28242469-28242553)
chr1 (78-127)||(37876573-37876622)
chr1 (168-239)||(42297871-42297943)
chr1 (60-101)||(4552448-4552489)
chr1 (197-269)||(12318452-12318523)
chr1 (65-126)||(19754778-19754837)
chr1 (188-250)||(37032989-37033050)
chr1 (60-101)||(28220026-28220067)
chr1 (59-118)||(833969-834025)
chr1 (57-101)||(37503359-37503402)
[»] chr7 (29 HSPs)
chr7 (168-272)||(4508606-4508710)
chr7 (167-272)||(48599234-48599338)
chr7 (168-272)||(4510448-4510552)
chr7 (168-272)||(4512290-4512394)
chr7 (168-264)||(34310614-34310711)
chr7 (168-272)||(32357954-32358058)
chr7 (188-272)||(8359236-8359319)
chr7 (193-272)||(3259159-3259237)
chr7 (168-252)||(2360876-2360960)
chr7 (60-127)||(4510339-4510404)
chr7 (60-127)||(4512181-4512246)
chr7 (188-269)||(22328310-22328390)
chr7 (188-269)||(29608904-29608985)
chr7 (60-126)||(32357848-32357914)
chr7 (168-269)||(6359849-6359952)
chr7 (60-127)||(6430431-6430496)
chr7 (60-127)||(22270256-22270321)
chr7 (60-127)||(30814705-30814770)
chr7 (62-127)||(2360774-2360837)
chr7 (195-250)||(2390472-2390526)
chr7 (62-101)||(4508499-4508538)
chr7 (60-118)||(14069633-14069689)
chr7 (60-118)||(14379661-14379717)
chr7 (60-118)||(23555354-23555410)
chr7 (60-114)||(26417633-26417685)
chr7 (60-101)||(18126974-18127015)
chr7 (60-101)||(41317238-41317279)
chr7 (60-119)||(31732768-31732825)
chr7 (59-118)||(38671024-38671080)
[»] chr6 (20 HSPs)
chr6 (167-272)||(5043792-5043896)
chr6 (168-272)||(21589095-21589199)
chr6 (168-272)||(26830020-26830127)
chr6 (188-272)||(26800752-26800835)
chr6 (188-272)||(17758188-17758272)
chr6 (188-272)||(17763155-17763239)
chr6 (200-272)||(22424758-22424829)
chr6 (75-127)||(26829925-26829977)
chr6 (188-250)||(603005-603066)
chr6 (60-127)||(17758336-17758402)
chr6 (55-126)||(17763304-17763374)
chr6 (60-127)||(21589242-21589308)
chr6 (60-127)||(602903-602968)
chr6 (168-272)||(2972835-2972943)
chr6 (60-126)||(5043941-5044006)
chr6 (65-127)||(22424620-22424680)
chr6 (192-250)||(3808628-3808685)
chr6 (83-127)||(3808518-3808560)
chr6 (240-272)||(21593828-21593860)
chr6 (59-118)||(26954090-26954146)
[»] chr5 (13 HSPs)
chr5 (167-272)||(27015687-27015790)
chr5 (167-272)||(5058209-5058314)
chr5 (168-269)||(27637512-27637613)
chr5 (185-272)||(16640856-16640944)
chr5 (188-272)||(40147425-40147508)
chr5 (168-272)||(213630-213737)
chr5 (60-127)||(38747288-38747353)
chr5 (58-127)||(40147545-40147612)
chr5 (188-272)||(316928-317011)
chr5 (60-118)||(5887235-5887290)
chr5 (58-97)||(13488532-13488571)
chr5 (73-127)||(28278599-28278651)
chr5 (168-217)||(40751195-40751245)
[»] chr3 (29 HSPs)
chr3 (168-272)||(6095499-6095603)
chr3 (168-272)||(46860639-46860743)
chr3 (188-272)||(55301892-55301975)
chr3 (168-269)||(30236293-30236394)
chr3 (168-272)||(54593868-54593975)
chr3 (168-268)||(31340121-31340222)
chr3 (60-126)||(54594019-54594086)
chr3 (168-272)||(41819421-41819526)
chr3 (178-273)||(4570116-4570212)
chr3 (168-235)||(47304458-47304526)
chr3 (60-127)||(49199254-49199321)
chr3 (59-127)||(6095389-6095456)
chr3 (188-250)||(49199385-49199446)
chr3 (199-272)||(36019013-36019085)
chr3 (59-127)||(40913581-40913647)
chr3 (58-126)||(55301756-55301825)
chr3 (167-269)||(46173525-46173628)
chr3 (60-118)||(29196189-29196245)
chr3 (188-235)||(40913497-40913544)
chr3 (188-235)||(43403660-43403707)
chr3 (188-250)||(43401717-43401778)
chr3 (63-127)||(34491495-34491557)
chr3 (60-127)||(43403530-43403596)
chr3 (60-102)||(4570229-4570272)
chr3 (60-118)||(29813374-29813430)
chr3 (73-127)||(43401601-43401653)
chr3 (60-101)||(4160059-4160100)
chr3 (60-118)||(761157-761211)
chr3 (59-118)||(9666269-9666325)
[»] scaffold0176 (2 HSPs)
scaffold0176 (192-272)||(17927-18007)
scaffold0176 (60-125)||(17793-17857)
[»] scaffold0236 (1 HSPs)
scaffold0236 (185-272)||(10653-10740)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 35446784 - 35446888
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  35446784 tatatagatctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 35446882  T
Q  267 aatgtt 272  Q
    ||||||    
T  35446883 aatgtt 35446888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 35446635 - 35446742
Alignment:
Q  18 taatgtgcataacaagatagtggatactttaagagaaacatgtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||    
T  35446635 taatgtgcataacaagatagtggatactttaagagaaacatgtgttgtgaattctgactcaaatttcacatcaatataaactatatgatgtgtggagcaa 35446734  T
Q  118 atatcaat 125  Q
     |||||||    
T  35446735 gtatcaat 35446742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 45727195 - 45727093
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||||||||| ||||  ||||| |||||||||||||||||||| ||||||| || |    
T  45727195 atatagacctagtctataaactaagtgcatagcaaaaccacaatccaaccaaagaataa--aagat-aaagagagtaaagaaaagataacaacactaaaa 45727099  T
Q  267 aatgtt 272  Q
    ||||||    
T  45727098 aatgtt 45727093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 45727305 - 45727239
Alignment:
Q  61 gttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  45727305 gttgtgaattcagactcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatgg 45727239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 17450824 - 17450749
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaa 264  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| |||||||||| ||||||||| ||||||||||    
T  17450824 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagagagtacagaaaagataacaacaccaa 17450749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 33648420 - 33648337
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||||| ||||||| ||| |||| ||||||||||| |||||||||| ||||||||  |||||||||| |||||||    
T  33648420 caagtgcatagcaaaatcacaattaaactaaagaataaacaagat-aaagagagtagagaaaagacaacaacaccaataaatgtt 33648337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 1631634 - 1631733
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||| |||||| |||||||||| |||||||||||||||| |||  || | ||||||||||| |||||||| || |||||||| ||||||| ||||    
T  1631634 tatatagacttagtctgtaatcaagtgtatagcaaaaccacaatccaa--aaggaataaacaagat-aaagagagcaaggaaaagataacaacactaaga 1631730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 42288031 - 42288111
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaat 269  Q
    ||||||||||| ||||||||||| ||||||| | ||||||||| | |||||| ||||||||||||| ||| |||||||||||    
T  42288031 caagtgcatagaaaaaccacaatccaaccaaggaataaacaag-ttaaagagggtaaagaaaagataacagcaccaagaaat 42288111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 7451366 - 7451281
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaa-agagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||||| |||||||| ||||||    |||||||||| |||||||    
T  7451366 caagtgcataacaaaaccacaatcgaaccaaagaataaacaagataaagagagagtagagaaaaatagacaacaccaataaatgtt 7451281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 29868239 - 29868181
Alignment:
Q  58 tgtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||||| ||||||||||||||| |||||||||||||  ||| |||||||||||    
T  29868239 tgtgttgtgaattcggactcaaatttcacagcaatacaaactat--gatgtgtggagcaaa 29868181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 11690856 - 11690800
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||||    
T  11690856 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaaa 11690800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 1631538 - 1631588
Alignment:
Q  76 tcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    |||||||||||| |||||||||||||| ||| ||||||| || ||||||||    
T  1631538 tcaaatttcacatcaatacaaactatatgatgtgtggagtaagtatcaatg 1631588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 42362714 - 42362658
Alignment:
Q  59 gtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    ||||||||||||| |||||||| | ||||||||||||||||||  ||| |||||||||||    
T  42362714 gtgttgtgaattcggactcaaaat-cacaccaatacaaactat--gatgtgtggagcaaa 42362658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 41639694 - 41639590
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||    
T  41639694 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaaggataaacaagat-aaagagagtaaagaaacgataacaacaccaaga 41639596  T
Q  267 aatgtt 272  Q
    ||||||    
T  41639595 aatgtt 41639590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 40632713 - 40632609
Alignment:
Q  168 atatagacctagtctata-atcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  40632713 atatagacctagtctatataccaagtgcatggcaaaaccacaattcaaccaaaggataaacaagat-aaagagagtaaaaaaaagataacaacaccaaga 40632615  T
Q  267 aatgtt 272  Q
    ||||||    
T  40632614 aatgtt 40632609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 26364505 - 26364404
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||| ||| | ||||||||||| |||||||||||||||||||| ||||||||||||    
T  26364505 tatatagacctagtctataattaagtgtatagcaaaaccacaatccaagcaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 26364407  T
Q  267 aat 269  Q
    |||    
T  26364406 aat 26364404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 379649 - 379545
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| | ||||||||| ||||||||||||  |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  379649 atatagacctagtctataaaccaagtgcataacaaaaccacaatctaaccaaaggataaacaagataaa-gagagtaaagaaaagataacaacaccaaga 379551  T
Q  267 aatgtt 272  Q
    ||||||    
T  379550 aatgtt 379545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 50673747 - 50673851
Alignment:
Q  168 atatagacctagtctataatcaagtgcatagcaaaaccacaattc-aaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||| ||||||||||||||||||||||||||||||||||| | || ||| | ||||||||||| |||||||||||||||||||| ||||||||||||    
T  50673747 atatagatctagtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 50673845  T
Q  267 aatgtt 272  Q
    ||||||    
T  50673846 aatgtt 50673851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 8648411 - 8648303
Alignment:
Q  167 tatatagacctagt----ctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacacc 262  Q
    ||||||||||||||    |||||||||| ||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||||||||| ||||||||    
T  8648411 tatatagacctagtctatctataatcaaatgcatagcaaaaccacaatccaaccaaggaataaacaagat-aaagagagtaaagaaaagataacaacacc 8648313  T
Q  263 aagaaatgtt 272  Q
    ||||||||||    
T  8648312 aagaaatgtt 8648303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 8665663 - 8665573
Alignment:
Q  180 tctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgt 271  Q
    ||||||||||| ||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  8665663 tctataatcaaatgcatagcaaaaccacaatccaaccaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaagaaatgt 8665573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 35662709 - 35662605
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    |||||||| |||||||||| | |||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||||||||| |||||||||| |    
T  35662709 atatagacatagtctataaaccaagtgcatagcaaaaccacaatccaaccaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaaaa 35662611  T
Q  267 aatgtt 272  Q
    ||||||    
T  35662610 aatgtt 35662605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 6656203 - 6656120
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  6656203 caagtgcatagcaaaaccacaatccaacaaaaggataaacaagat-aaagagagtaaagaaaagataacaacaccaagaaatgtt 6656120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 12073640 - 12073557
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  12073640 caagtgcataacaaaaccacaatctaaccaaagaataaacaagataaa-gagagtaaagaaaagataacaacaccaagaaatgtt 12073557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 46703817 - 46703739
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaag 246  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||||||| ||||||||||| |||||||||||||    
T  46703817 tatatagacctattctataatcaagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagagagtaaag 46703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 266
Target Start/End: Original strand, 55085362 - 55085439
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||    
T  55085362 caagtgcatagcaaaaccacaatccaaccaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 55085439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 41964661 - 41964582
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatg 270  Q
    |||||||||||||||||||||||  |||||||| |||||||||||   |||||||||||||||||| ||||||||||||||||    
T  41964661 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagat---agagagtaaagaaaagataacaacaccaagaaatg 41964582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 27416886 - 27416961
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaa 264  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||    
T  27416886 caagtgcatggcaaaaccacaatccaaccaaagaataaacaagat-aaagagagtaaagacaagataacaacaccaa 27416961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 46703740 - 46703666
Alignment:
Q  197 agcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||||  |||||||  |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  46703740 agcaaaaccacaatctaaccaaatgataaacaagataaa-gagagtaaagaaaagataacaacaccaagaaatgtt 46703666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 54883265 - 54883188
Alignment:
Q  192 tgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaag-aaaagatcacaacaccaagaaat 269  Q
    |||| |||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||| |||||||||||||||    
T  54883265 tgcagagcaaaaccacaattcaaccaaagaataaataagat-aaagagagtaaagaaaaagataacaacaccaagaaat 54883188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 26699362 - 26699426
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagat 253  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||    
T  26699362 caagtgcatagcaaaaccataattgaaccaaagaataaacaagat-aaagagagtaaagaaaagat 26699426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 50262487 - 50262551
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  50262487 tgttgtgaattcagactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatg 50262551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 41639803 - 41639736
Alignment:
Q  58 tgtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||| ||||||||||||||| |||||||||||||  ||| |||||||||| |||||||||    
T  41639803 tgtgttgtgaattcagactcaaatttcacatcaatacaaactat--gatgtgtggagcaagtatcaatgg 41639736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 33990093 - 33990010
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||||| ||| |||| |||||||| ||||||||||| |||||||||| | |||| || | ||||||||||||||||    
T  33990093 caagtgcatagcaaatccagaattgaaccaaagaataaacaagat-aaagagagtagaaaaaatataataacaccaagaaatgtt 33990010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 50262596 - 50262678
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaa 250  Q
    |||||||||||||| | ||||||||||||| ||||||||||||| |||  || | ||||||||||||||| |||||| ||||||    
T  50262596 tatatagacctagtatgtaatcaagtgcatggcaaaaccacaatccaagtaaggaataaacaagataaaa-agagtagagaaaa 50262678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 40632826 - 40632757
Alignment:
Q  59 gtgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||| ||| ||| |||||| |||||||||    
T  40632826 gtgttgtgaattccggactcaaattacacaccaatacaaactatatgatgtgtagagcaagtatcaatgg 40632757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 2210082 - 2210030
Alignment:
Q  73 gactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  2210082 gactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 2210030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 2209966 - 2209905
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaa 250  Q
    |||||||||||||||||||||||  |||||||  ||||||||||| |||||||||| ||||||    
T  2209966 caagtgcatagcaaaaccacaatctaaccaaatgataaacaagat-aaagagagtagagaaaa 2209905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 26175434 - 26175492
Alignment:
Q  58 tgtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||||    
T  26175434 tgtgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaaa 26175492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 36994898 - 36994857
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  36994898 tgttgtgaattctgactcaaaactcacaccaatacaaactat 36994857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 12119791 - 12119708
Alignment:
Q  189 aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaa----agatcacaacaccaagaaat 269  Q
    ||||||||||||||||||||||   |||||||  |||||||||| |||||||||| |||||    |||| |||||||||||||||    
T  12119791 aagtgcatagcaaaaccacaatcggaccaaagactaaacaagat-aaagagagtagagaaaaaatagatgacaacaccaagaaat 12119708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 48893440 - 48893498
Alignment:
Q  57 atgtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||||    
T  48893440 atgtgttgtgaattcggactcaaa-atcacaccaatacaaactat--gatgtgtggagcaaa 48893498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 12739353 - 12739394
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  12739353 tgttgtgaattcggactcaaaactcacaccaatacaaactat 12739394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 12743728 - 12743769
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  12743728 tgttgtgaattcggactcaaaactcacaccaatacaaactat 12743769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 7596 - 7491
Alignment:
Q  167 tatatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaag 265  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  7596 tatatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagat-aaagagagtaaagaaaagataacaacaccaag 7498  T
Q  266 aaatgtt 272  Q
    |||||||    
T  7497 aaatgtt 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 7687 - 7636
Alignment:
Q  74 actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  7687 actcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 7636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 4283792 - 4283688
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||    
T  4283792 atatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 4283694  T
Q  267 aatgtt 272  Q
    ||||||    
T  4283693 aatgtt 4283688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 42434893 - 42434995
Alignment:
Q  170 atagacctagtctataatcaagtgcatagcaaaaccacaattc-aaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||| | || ||| | ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  42434893 atagacctagtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagat-aaagaaagtaaagaaaagataacaacaccaagaaa 42434991  T
Q  269 tgtt 272  Q
    ||||    
T  42434992 tgtt 42434995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 3772442 - 3772359
Alignment:
Q  185 aatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaat 269  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||||| |||||||||| ||||||||| ||| |||||||||||    
T  3772442 aatcaagtgcatagcaaaaccacaatctaaccaaagaataaacaagat-aaagagagtagagaaaagataacaccaccaagaaat 3772359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 40329023 - 40328940
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||||||||||||  |||||||| |||||||||| ||| ||||||| ||||||||| ||||||||||||||||||    
T  40329023 caagtgcatagcaaaaccacaatctaaccaaaggataaacaaga-aaaggagagtagagaaaagataacaacaccaagaaatgtt 40328940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 18655671 - 18655564
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaac-caaagcataaacaagataaa-agagagtaaagaaaagatcacaacaccaa 264  Q
    ||||||| ||||||||||| | |||||||||||||||||||||| |||  ||| | |||||||||||||| |||||||||||||||||| ||||||||||    
T  18655671 atatagatctagtctataaaccaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacaccaa 18655572  T
Q  265 gaaatgtt 272  Q
     |||||||    
T  18655571 aaaatgtt 18655564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 272
Target Start/End: Original strand, 2999718 - 2999806
Alignment:
Q  183 ataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||||||||||| ||||||  |||||||| ||||||||||| |||||||||| |||||||||  ||||| |||||||||||    
T  2999718 ataatcaagtgcatagcaaaatcacaatctaaccaaagaataaacaagat-aaagagagtagagaaaagatatcaacatcaagaaatgtt 2999806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 40221992 - 40221917
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaa 264  Q
    ||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||| ||||| ||||||||||    
T  40221992 caagtgcatagcaaaaccacaatccaaccaaagaatgaacaagat-aaagagagtaaagacaagataacaacaccaa 40221917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 11384232 - 11384149
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||    |||||||||| |||||||    
T  11384232 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagagagtaaagaaaaatagacaacaccaaaaaatgtt 11384149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 10930118 - 10930199
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagag-taaagaaaagatcacaacaccaagaaat 269  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||| |||| |||  ||||||||||| |||||||||||||||    
T  10930118 caagtgcatagcaaaaccacaatccaacaaaagaataaacaagat-aaagggagcaaaagaaaagataacaacaccaagaaat 10930199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 4743025 - 4743083
Alignment:
Q  58 tgtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||  || |||||||||||    
T  4743025 tgtgttgtgaattcggactcaaatctcacaccaatacaaactata--atgtgtggagcaaa 4743083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 42434794 - 42434847
Alignment:
Q  74 actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||||||||||||||||||||||| ||| || ||||||| |||||||||    
T  42434794 actcaaatttcacaccaatacaaactatatgatgtgaggagcaagtatcaatgg 42434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 4283872 - 4283819
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtgga 113  Q
    |||||||||||| | ||||||||| |||||||||||||||||| ||| ||||||    
T  4283872 tgttgtgaattcggtctcaaattttacaccaatacaaactatatgatgtgtgga 4283819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 3303474 - 3303526
Alignment:
Q  64 gtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||| ||||||||| |||||||||||||||||||  ||| |||||||||||    
T  3303474 gtgaattcggactcaaatctcacaccaatacaaactat--gatgtgtggagcaaa 3303526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 15213155 - 15213099
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||||    
T  15213155 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaaa 15213099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 10240363 - 10240288
Alignment:
Q  197 agcaaaaccacaattcaaccaaagca-taaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||||  |||||||  | ||||||||||||| |||||| |||||||||  |||| |||||||||||||    
T  10240363 agcaaaaccacaatcgaaccaaaaaaataaacaagataaa-gagagtgaagaaaagagaacaaaaccaagaaatgtt 10240288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 37168566 - 37168462
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||| |||||||||||||||||||| ||||||||||||    
T  37168566 tatatagacctagtctataatcaagtgcatagcaaaaccacaatcaaaccaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 37168468  T
Q  267 aatgtt 272  Q
    ||||||    
T  37168467 aatgtt 37168462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 7482130 - 7482234
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||||||||| |||| |||| ||    
T  7482130 tatatagacctagtctataatcaagtgcatagcaaaaccacaatccaaccaaggaataaacaagat-aaagagagtaaagaaaagatgacaataccatga 7482228  T
Q  267 aatgtt 272  Q
    ||||||    
T  7482229 aatgtt 7482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 13548899 - 13549004
Alignment:
Q  168 atatagacctagtctataatc--aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaag 265  Q
    ||||||||||||||||||| |  |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  13548899 atatagacctagtctataaaccaaagtgcatagcaaaaccacaatccaaccaaagaataaacaagat-aaagagagtaaagaaaagataacaacaccaag 13548997  T
Q  266 aaatgtt 272  Q
    |||||||    
T  13548998 aaatgtt 13549004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 34603831 - 34603737
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacacc 262  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||||||||||| ||||||||    
T  34603831 tatatagacctagtctataatcaagtgcatagcaaaaccacaatccaaccaaggaataaacaagat-aaagagagtaaagaaaagataacaacacc 34603737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 37876667 - 37876770
Alignment:
Q  169 tatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaa 267  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||||||||  ||||||||||| |||||||||||||||||||| |||||||||||||    
T  37876667 tatagacctagtctataaaccaagtgcatagaaaaaccacaattcaaccaaatgataaacaagat-aaagagagtaaagaaaagataacaacaccaagaa 37876765  T
Q  268 atgtt 272  Q
    |||||    
T  37876766 atgtt 37876770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 31925606 - 31925711
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataa-acaagataaaagagagtaaagaaaagatcacaacaccaag 265  Q
    ||||||||||||||||||| | |||||||||||||||||||||| ||||||||| |||| ||||||| || |||||||||||||| || |||||||||||    
T  31925606 atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaccaaagaataatacaagat-aacgagagtaaagaaaaaataacaacaccaag 31925704  T
Q  266 aaatgtt 272  Q
    |||||||    
T  31925705 aaatgtt 31925711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 11348969 - 11348862
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaac-caaagcataaacaagataaa-agagagtaaagaaaagatcacaacaccaa 264  Q
    ||||||||||||||||||| | |||||||||||||||||||||| |||  ||| | |||||||||||||| |||||||||||||||||| |||||| |||    
T  11348969 atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacatcaa 11348870  T
Q  265 gaaatgtt 272  Q
    ||||||||    
T  11348869 gaaatgtt 11348862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 13547020 - 13547093
Alignment:
Q  198 gcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  13547020 gcaaaaccacaatccaaccaaagaataaacaagataaa-gagagtaaagaaaagataacaacaccaagaaatgtt 13547093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 47255236 - 47255343
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaa---agaaaagatcacaacacca 263  Q
    ||||||||||||||||||| | ||||||||||||||||||||||  |||||||| ||||||||||| |||||||||||   | |||| || |||||||||    
T  47255236 atatagacctagtctataaaccaagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagagagtaaaagaaaaaaaataacaacacca 47255334  T
Q  264 agaaatgtt 272  Q
    |||||||||    
T  47255335 agaaatgtt 47255343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 13548792 - 13548859
Alignment:
Q  60 tgttgtgaattctga-ctcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  13548792 tgttgtgaattctgaactcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatg 13548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 29136514 - 29136412
Alignment:
Q  170 atagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaa 268  Q
    ||||||||||||||||| | ||||||||||||||||||||||  |||||||| ||||||||||| |||||||||| ||||||    ||| ||||||||||    
T  29136514 atagacctagtctataaaccaagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagagagtagagaaaaatagacagcaccaagaaa 29136416  T
Q  269 tgtt 272  Q
    ||||    
T  29136415 tgtt 29136412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 13546884 - 13546953
Alignment:
Q  58 tgtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||| | |||||||||| |||||||||||||||||  || |||||||||| |||||||||    
T  13546884 tgtgttgtgaattcggtctcaaatttctcaccaatacaaactatataatgtgtggagcaagtatcaatgg 13546953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 19754737 - 19754677
Alignment:
Q  192 tgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagat 253  Q
    ||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||||||    
T  19754737 tgcatagcaaaaccacaatccaacaaaaggataaacaagat-aaagagagtaaagaaaagat 19754677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 37032860 - 37032925
Alignment:
Q  62 ttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||||   ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  37032860 ttgtgaattcgatctcaaatttcacaacaatacaaactatatgatgtgtggagcaaatatcaatgg 37032925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 47115420 - 47115337
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||| ||||||||||||  ||| |||| ||||||||||||||| |||| | ||||||||| |||||| |||||||||||    
T  47115420 caagtgcataacaaaaccacaatctaacaaaaggataaacaagataaaa-agagcagagaaaagataacaacatcaagaaatgtt 47115337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 11349080 - 11349013
Alignment:
Q  60 tgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    |||||||||||| | |||||||||| |||||||||||||||||| ||| |||||||||| ||||||||    
T  11349080 tgttgtgaattcgggactcaaattttacaccaatacaaactatatgatgtgtggagcaagtatcaatg 11349013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 19752930 - 19752866
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagat 253  Q
    ||||||||||| ||||||||||| |||| |||| ||||||||||| |||||||||||| |||||||    
T  19752930 caagtgcatagtaaaaccacaatccaacaaaaggataaacaagat-aaagagagtaaataaaagat 19752866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 19753032 - 19752991
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  19753032 tgttgtgaattcagactcaaatttcacaccaatacaaactat 19752991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 28242553 - 28242469
Alignment:
Q  188 caagtgcatagcaaaa-ccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||| ||||||||| |||||||  ||| |||  |||||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  28242553 caagtgaatagcaaaaaccacaatctaacaaaatgataaacaagataaa-gagagtagagaaaagataacaacaccaagaaatgtt 28242469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 37876573 - 37876622
Alignment:
Q  78 aaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  37876573 aaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatgg 37876622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 42297871 - 42297943
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagag 239  Q
    ||||| ||| ||||||||| | ||||||||||||||| |||||| ||||||||  ||||||||||||||||||    
T  42297871 atatataccaagtctataaaccaagtgcatagcaaaatcacaatccaaccaaataataaacaagataaaagag 42297943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 4552448 - 4552489
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  4552448 tgttgcgaattcggactcaaatttcacaccaatacaaactat 4552489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 12318452 - 12318523
Alignment:
Q  197 agcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaat 269  Q
    ||||||| || |||| |||||||| ||||||||||| |||| ||||||||||||||  |||||||||| ||||    
T  12318452 agcaaaatcataattgaaccaaagaataaacaagat-aaagggagtaaagaaaagagaacaacaccaaaaaat 12318523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 19754837 - 19754778
Alignment:
Q  65 tgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    ||||||| || |||||||||||||||||| |||||||  ||| |||||||||| ||||||||    
T  19754837 tgaattcagattcaaatttcacaccaatagaaactat--gatgtgtggagcaagtatcaatg 19754778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 37032989 - 37033050
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaa 250  Q
    |||||||||||||||| |||| |  |||||||| ||||||||||| |||||||||| ||||||    
T  37032989 caagtgcatagcaaaatcacactctaaccaaaggataaacaagat-aaagagagtagagaaaa 37033050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 28220026 - 28220067
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  28220026 tgttgtgaattcggactcaaaactcacaccaatacaaactat 28220067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 833969 - 834025
Alignment:
Q  59 gtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    ||||||||||||| |||||||| | ||||||||||||||||||  ||| |||||||||||    
T  833969 gtgttgtgaattcggactcaaaat-cacaccaatacaaactat--gatgtgtggagcaaa 834025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 37503359 - 37503402
Alignment:
Q  57 atgtgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||    
T  37503359 atgtgttgtgaattcggactcaaa-atcacaccaatacaaactat 37503402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 4508606 - 4508710
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||    
T  4508606 atatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggataaacaagat-aaagagagtaaagaaaatataacaacaccaaga 4508704  T
Q  267 aatgtt 272  Q
    ||||||    
T  4508705 aatgtt 4508710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 272
Target Start/End: Original strand, 48599234 - 48599338
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| ||||||| | ||||||||||| |||||||||||||||||||| |||||| |||||    
T  48599234 tatatagacctagtctataatcaagtgcacagcaaaactacaatccaaccaaggaataaacaagat-aaagagagtaaagaaaagataacaacatcaaga 48599332  T
Q  267 aatgtt 272  Q
    ||||||    
T  48599333 aatgtt 48599338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 4510448 - 4510552
Alignment:
Q  168 atatagacctagtctataa-tcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||| || ||||||||||||||||| ||||||||||||    
T  4510448 atatagacctagtctataaatcaagtgcatagcaaaaacacaattcaactaatggataaacaagatcaa-gagagtaaagaaaagataacaacaccaaga 4510546  T
Q  267 aatgtt 272  Q
    ||||||    
T  4510547 aatgtt 4510552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 4512290 - 4512394
Alignment:
Q  168 atatagacctagtctataa-tcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||| || | ||||||||||| || ||||||||||||||||| ||||||||||||    
T  4512290 atatagacctagtctataaatcaagtgcatagcaaaaacacaattcaactaatggataaacaagatcaa-gagagtaaagaaaagataacaacaccaaga 4512388  T
Q  267 aatgtt 272  Q
    ||||||    
T  4512389 aatgtt 4512394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 34310614 - 34310711
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaa-gcataaacaagataaaagagagtaaagaaaagatcacaacaccaa 264  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||    
T  34310614 atatagacctagtctataaaccaagtgcatagcaaaaccacaattcaaccaaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaa 34310711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 32357954 - 32358058
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||| ||||||| || |||||| |||||||||||||||| ||| | ||||||||| |||| ||||||||||||||||| ||||||||||||    
T  32357954 atatagacctagtttataatccaattgcataacaaaaccacaattcaagcaaggaataaacaagttaaa-gagagtaaagaaaagataacaacaccaaga 32358052  T
Q  267 aatgtt 272  Q
    ||||||    
T  32358053 aatgtt 32358058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 8359236 - 8359319
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| || ||||||| ||||||||| ||||||||||||||||||    
T  8359236 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aatgagagtagagaaaagataacaacaccaagaaatgtt 8359319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 3259237 - 3259159
Alignment:
Q  193 gcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  3259237 gcatagcaaaaccacaatccaaccaaggaataaacaagataaa-gagagtaaagaaaagataacaacaccaggaaatgtt 3259159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 2360876 - 2360960
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaaga 252  Q
    |||||||||||||||| || | ||||||||| |||||||||||||||||||| | ||||||||||| ||||||| |||||||||||    
T  2360876 atatagacctagtctagaaaccaagtgcatatcaaaaccacaattcaaccaaggaataaacaagat-aaagagaataaagaaaaga 2360960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 4510339 - 4510404
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  4510339 tgttgtgaattcggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 4510404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 4512181 - 4512246
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  4512181 tgttgtgaattcggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 4512246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 22328310 - 22328390
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaat 269  Q
    |||||||||| ||||||||||||  ||| |||| ||||||||||| |||||||||| ||||||||| |||||||||| ||||    
T  22328310 caagtgcataacaaaaccacaatcgaacaaaagaataaacaagat-aaagagagtagagaaaagataacaacaccaaaaaat 22328390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 29608985 - 29608904
Alignment:
Q  188 caagtgcatagcaaaa-ccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaat 269  Q
    |||||||||| ||||| |||||||  || ||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||    
T  29608985 caagtgcatatcaaaaaccacaatctaagcaaaggataaacaagataaa-gagagtagagaaaagataacaacaccaagaaat 29608904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 32357848 - 32357914
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    |||||||||||| ||| ||||||||||||||||||||| |||| ||| ||||||| || ||||||||    
T  32357848 tgttgtgaattcggacacaaatttcacaccaatacaaattatatgatgtgtggagtaagtatcaatg 32357914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 6359849 - 6359952
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaac-caaagcataaacaagataaaagagagtaaa-gaaaagatcacaacaccaa 264  Q
    ||||| ||||||||||||| | |||||||||||||||||||||| ||||  || | ||||||||||| ||||| || ||| |||||||| ||||||||||    
T  6359849 atatatacctagtctataaaccaagtgcatagcaaaaccacaatccaacttaaggaataaacaagat-aaagaaagcaaatgaaaagataacaacaccaa 6359947  T
Q  265 gaaat 269  Q
    |||||    
T  6359948 gaaat 6359952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 6430496 - 6430431
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||| |||||||||    
T  6430496 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 6430431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 22270321 - 22270256
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||| ||||||| ||||||||||||||| |||||||||||||  ||| |||||||||| |||||||||    
T  22270321 tgttatgaattcggactcaaatttcacagcaatacaaactat--gatgtgtggagcaagtatcaatgg 22270256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 30814770 - 30814705
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||| |||||||||||||||||| ||||||  ||| ||| |||||||||| |||||||||    
T  30814770 tgttgtgaattcggactcaaatttcacaccagtacaaa--atatgatgtgtggagcaagtatcaatgg 30814705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 2360774 - 2360837
Alignment:
Q  62 ttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||  |||||||| ||||||||||||||||||||  ||| |||||||||| |||||||||    
T  2360774 ttgtgaatttggactcaaaattcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 2360837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 2390526 - 2390472
Alignment:
Q  195 atagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaa 250  Q
    |||||||||||||||| |||| |||| ||||||||||| |||||||||| ||||||    
T  2390526 atagcaaaaccacaatccaacaaaaggataaacaagat-aaagagagtagagaaaa 2390472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 4508499 - 4508538
Alignment:
Q  62 ttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  4508499 ttgtgaattcggtctcaaatttcacaccaatacaaactat 4508538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 14069633 - 14069689
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||||    
T  14069633 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaaa 14069689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 14379661 - 14379717
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||||    
T  14379661 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaaa 14379717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 23555410 - 23555354
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||||    
T  23555410 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaaa 23555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 26417685 - 26417633
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggag 114  Q
    |||||||||||| ||||||||  |||||||||||||||||||  |||||||||||    
T  26417685 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatatgtggag 26417633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 18127015 - 18126974
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  18127015 tgttgtgaattcggactcaaaactcacaccaatacaaactat 18126974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 41317238 - 41317279
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    ||||||||||||  |||||||| |||||||||||||||||||    
T  41317238 tgttgtgaattcgaactcaaatctcacaccaatacaaactat 41317279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 31732768 - 31732825
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaat 119  Q
    |||||||||||| ||||||||  |||||||| ||||||||||  ||| ||||||||||||    
T  31732768 tgttgtgaattcggactcaaaactcacaccagtacaaactat--gatgtgtggagcaaat 31732825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 38671024 - 38671080
Alignment:
Q  59 gtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    ||||||||||||| |||||||| | ||||||||||||||||||  ||| |||||||||||    
T  38671024 gtgttgtgaattcggactcaaaat-cacaccaatacaaactat--gatgtgtggagcaaa 38671080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 5043896 - 5043792
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||   ||||||||||| |||||||||||||||||||| ||||||||||||    
T  5043896 tatatagacctattctataatcaagtgcatagcaaaaccacaatccaaccaagaaataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 5043798  T
Q  267 aatgtt 272  Q
    ||||||    
T  5043797 aatgtt 5043792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 21589199 - 21589095
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| | |||||||||||||||||||||| |||| || | ||||||||||| || || |||||||||||||| ||||||||||||    
T  21589199 atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagat-aaggaaagtaaagaaaagataacaacaccaaga 21589101  T
Q  267 aatgtt 272  Q
    ||||||    
T  21589100 aatgtt 21589095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 26830020 - 26830127
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaac-caaagcataaacaagataaa-agagagtaaagaaaagatcacaacaccaa 264  Q
    ||||| ||||||||||||| | |||||||||||||||||||||| |||  ||| | |||||||||||||| |||||||||||||||||| ||||||||||    
T  26830020 atataaacctagtctataaaccaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagagtaaagaaaagataacaacaccaa 26830119  T
Q  265 gaaatgtt 272  Q
    ||||||||    
T  26830120 gaaatgtt 26830127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 26800835 - 26800752
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||||||||||||  |||||||  ||||||||||||||| |||||| ||||||||| ||||||||||||||||||    
T  26800835 caagtgcatagcaaaaccacaatctaaccaaaagataaacaagataaaa-agagtagagaaaagataacaacaccaagaaatgtt 26800752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 17758272 - 17758188
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagt-aaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| |||||| || |||| |||||| ||||||||||||||||||    
T  17758272 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagagcgtaaaaggaaagataacaacaccaagaaatgtt 17758188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 17763239 - 17763155
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagt-aaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||||||| |||||  |||||||| || |||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  17763239 caagtgcatagcaaaactacaatctaaccaaaggatgaacaagat-aaagagagtaaaagaaaagataacaacaccaagaaatgtt 17763155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 22424758 - 22424829
Alignment:
Q  200 aaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||  |||| ||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  22424758 aaaaccacaatctaacctaaggataaacaagataaa-gagagtagagaaaagataacaacaccaagaaatgtt 22424829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 26829925 - 26829977
Alignment:
Q  75 ctcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  26829925 ctcaaatttcacaccaatacaaactatatgatgtgtggagcaagtatcaatgg 26829977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 603005 - 603066
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaa 250  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||| ||||||    
T  603005 caagtgcatagtaaaaccacaatccaaccaaggcataaacaagat-aaagagagtagagaaaa 603066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 17758402 - 17758336
Alignment:
Q  60 tgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||| | ||||||||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  17758402 tgttgtgaattcgggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 17758336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 17763374 - 17763304
Alignment:
Q  55 acatgtgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||||  ||| |||||||||| ||||||||    
T  17763374 acatgtgttgtgaattcgggactcaaatttcacaccaatataaactat--gatgtgtggagcaagtatcaatg 17763304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 21589308 - 21589242
Alignment:
Q  60 tgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||| |||||||||||||||||||| |||||||  ||| |||||||||| |||||||||    
T  21589308 tgttgtgaattctggactcaaatttcacaccaatataaactat--gatgtgtggagcaagtatcaatgg 21589242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 602903 - 602968
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||| |||||||||    
T  602903 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 602968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 2972835 - 2972943
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatag-caaaaccacaattcaaccaaagcataaacaagata---aaagagagtaaagaaaagatcacaacacc 262  Q
    ||||||||||||||||||| | ||||||||||  |||||||||||  |||||||  ||||||||||||   | |||||||||| |||| || ||||||||    
T  2972835 atatagacctagtctataaactaagtgcatagaaaaaaccacaatctaaccaaatgataaacaagatatagagagagagtaaa-aaaaaataacaacacc 2972933  T
Q  263 aagaaatgtt 272  Q
    ||||||||||    
T  2972934 aagaaatgtt 2972943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 5044006 - 5043941
Alignment:
Q  60 tgttgtgaattc-tgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    |||||||||||| ||||| ||||||||||||||||||||||||  ||| |||||||||  ||||||||    
T  5044006 tgttgtgaattcctgacttaaatttcacaccaatacaaactat--gatgtgtggagcacgtatcaatg 5043941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 22424620 - 22424680
Alignment:
Q  65 tgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||| |||||||||||||||  ||||||||||||  ||| |||||||||| |||||||||    
T  22424620 tgaattcggactcaaatttcacattaatacaaactat--gatgtgtggagcaagtatcaatgg 22424680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 3808628 - 3808685
Alignment:
Q  192 tgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaa 250  Q
    ||||||||||||||| |||  |||||||| ||||||||||| |||||||||| ||||||    
T  3808628 tgcatagcaaaaccataatctaaccaaaggataaacaagat-aaagagagtagagaaaa 3808685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 3808518 - 3808560
Alignment:
Q  83 tcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||||||||  |||||||||||||| |||||||||    
T  3808518 tcacaccaatacaaactat--gatatgtggagcaagtatcaatgg 3808560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 21593860 - 21593828
Alignment:
Q  240 agtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||| ||||||||||||||||||    
T  21593860 agtaaagaaaagataacaacaccaagaaatgtt 21593828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 26954090 - 26954146
Alignment:
Q  59 gtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    ||||||||||||| |||||||| | ||||||||||||||||||  ||| |||||||||||    
T  26954090 gtgttgtgaattcggactcaaaat-cacaccaatacaaactat--gatgtgtggagcaaa 26954146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 27015790 - 27015687
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||| |    
T  27015790 tatatatacctagtctataatcaagtgcatatcaaaaccacaattcaaccaaagcataaacaagat-aaagagagtaaagaaaaaataac-acaccaaaa 27015693  T
Q  267 aatgtt 272  Q
    ||||||    
T  27015692 aatgtt 27015687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 5058314 - 5058209
Alignment:
Q  167 tatatagacctagtctataatcaagtgcatagcaaaaccacaattc-aaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaag 265  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| | || ||| | ||||||||||| |||||||||||||||||||| |||||||||||    
T  5058314 tatatagacctagtctataatcaagtgcatagtaaaaccataatccaaagcaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaag 5058216  T
Q  266 aaatgtt 272  Q
    |||||||    
T  5058215 aaatgtt 5058209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 27637512 - 27637613
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| | |||||||||||||||||||||| |||| || | ||||||||||| |||||||||||||||||||| ||||||||||||    
T  27637512 atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 27637610  T
Q  267 aat 269  Q
    |||    
T  27637611 aat 27637613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 16640856 - 16640944
Alignment:
Q  185 aatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaa-agagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||| |||||| ||||||||||||| ||| |||| |||| ||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  16640856 aatcaaatgcataacaaaaccacaatttaactaaagaataagcaagataaatagagagcaaagaaaagataacaacaccaagaaatgtt 16640944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 40147508 - 40147425
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| | ||||| || |||||||    
T  40147508 caagtgcataacaaaaccacaattcaaccaaaggataaacaagat-aaatagagtaaagaaaagataaaaacacaaaaaaatgtt 40147425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 213737 - 213630
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaac-caaagcataaacaagataaa-agagagtaaagaaaagatcacaacaccaa 264  Q
    ||||||||||||||||| | | ||||||||||||||||||||||  ||  ||| | |||||||||||||| ||||||||||| |||||| ||||||||||    
T  213737 atatagacctagtctattaactaagtgcatagcaaaaccacaatcaaaagcaaggaataaacaagataaagagagagtaaaggaaagataacaacaccaa 213638  T
Q  265 gaaatgtt 272  Q
    ||||||||    
T  213637 gaaatgtt 213630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 38747353 - 38747288
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||  |||||||||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  38747353 tgttgtgaatttggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 38747288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 40147612 - 40147545
Alignment:
Q  58 tgtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||| ||| |||||    
T  40147612 tgtgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaagtattaatgg 40147545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 317011 - 316928
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||| | ||||||||||||||| |||||||| |||||||| || ||||||||||  |||||||  ||||||| ||||| ||||    
T  317011 caagtgtaaagcaaaaccacaattgaaccaaagaataaacaaaat-aaagagagtagggaaaagagaacaacacaaagaattgtt 316928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 5887235 - 5887290
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| |||||||| | ||||||||||||||||||  |||||||||||||||    
T  5887235 tgttgtgaattcggactcaaaat-cacaccaatacaaactat--gatatgtggagcaaa 5887290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 13488571 - 13488532
Alignment:
Q  58 tgtgttgtgaattctgactcaaatttcacaccaatacaaa 97  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  13488571 tgtgttgtgaattcggactcaaatctcacaccaatacaaa 13488532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 28278651 - 28278599
Alignment:
Q  73 gactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||||||||||||||  ||| ||| |||||||||| |||||||||    
T  28278651 gactcaaatttcacaccaatacaaa--atatgatgtgtggagcaagtatcaatgg 28278599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 40751245 - 40751195
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaacca 217  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||| |||||    
T  40751245 atatagacctaatctataaaccaagtgcatagcaaaaccacaatttaacca 40751195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 6095499 - 6095603
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| | ||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  6095499 atatagacctagtctataaacgaagtgtatagcaaaaccacaatccaaccaaggcataaacaagat-aaagagagtaaagaaaagataacaacaccaaga 6095597  T
Q  267 aatgtt 272  Q
    ||||||    
T  6095598 aatgtt 6095603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 46860743 - 46860639
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||| |||||||||| |    
T  46860743 atatagacctaatctataaaccaagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagagagtaaagaaaagataacaacaccaaaa 46860645  T
Q  267 aatgtt 272  Q
    ||||||    
T  46860644 aatgtt 46860639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 55301892 - 55301975
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  55301892 caagtgcatagcaaagccacaattcaaccaaaggataaacaagat-aaagagagtaaagaaaagataacaacactaagaaatgtt 55301975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 30236394 - 30236293
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaaga 266  Q
    ||||||||||||||||||| | ||||||||| ||||| |||||| ||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||    
T  30236394 atatagacctagtctataaaccaagtgcataacaaaaacacaatccaaccaaggtataaacaagataaa-gagagtaaagaaaagataacaacaccaaga 30236296  T
Q  267 aat 269  Q
    |||    
T  30236295 aat 30236293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 54593975 - 54593868
Alignment:
Q  168 atatagacctagtctataatcaa-gtgcatagcaaaaccacaattcaac-caaagcataaacaagataaa-agagagtaaagaaaagatcacaacaccaa 264  Q
    |||||||| |||||||||| | | |||||||||||||||||||| |||  ||| | |||||||||||||| ||||| |||||||||||| ||||||||||    
T  54593975 atatagacatagtctataaaccatgtgcatagcaaaaccacaatccaaagcaaggaataaacaagataaagagagactaaagaaaagataacaacaccaa 54593876  T
Q  265 gaaatgtt 272  Q
    ||||||||    
T  54593875 gaaatgtt 54593868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 31340121 - 31340222
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagag-taaagaaaagatcacaacaccaag 265  Q
    ||||||||||||||||||| | |||||||||||||||||||||| |||| || | ||||||||||| ||||| ||  ||||||||||| |||||||||||    
T  31340121 atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagat-aaagaaagcaaaagaaaagataacaacaccaag 31340219  T
Q  266 aaa 268  Q
    |||    
T  31340220 aaa 31340222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 54594086 - 54594019
Alignment:
Q  60 tgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    |||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  54594086 tgttgtgaattcgggactcaaatttcacaccaatacaaactatatgatatgtagagcaagtatcaatg 54594019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 41819421 - 41819526
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaag-aaaagatcacaacaccaag 265  Q
    |||||||||||||| |||| | ||||||||||||||||||||||  |||||||| ||||||||||| ||||| |||| || |||| || ||||||||||     
T  41819421 atatagacctagtccataaaccaagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagaaagtagagaaaaaaataacaacaccaat 41819519  T
Q  266 aaatgtt 272  Q
    |||||||    
T  41819520 aaatgtt 41819526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 4570212 - 4570116
Alignment:
Q  178 agtctataatcaagtgcatagcaaaaccacaattc-aaccaaagcataaacaagataaaagagag-taaagaaaagatcacaacaccaagaaatgttg 273  Q
    ||||||||||||||||||||||||||||||||| | || ||| | ||||||||||| |||| |||  |||||||| || |||||||||||||||||||    
T  4570212 agtctataatcaagtgcatagcaaaaccacaatccaaagcaaggaataaacaagat-aaagggagcaaaagaaaatataacaacaccaagaaatgttg 4570116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 47304526 - 47304458
Alignment:
Q  168 atatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaa 235  Q
    ||||||||||||||||||| | |||||||||||||||||||||| |||| || | ||||||||||||||    
T  47304526 atatagacctagtctataaaccaagtgcatagcaaaaccacaatccaactaaggaataaacaagataaa 47304458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 49199254 - 49199321
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||| | ||||||||||||| ||||||||| |||| ||| |||||||||| |||||||||    
T  49199254 tgttgtgaattcggtctcaaatttcacagcaatacaaattatatgatgtgtggagcaagtatcaatgg 49199321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 6095389 - 6095456
Alignment:
Q  59 gtgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||||||| | ||||||||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  6095389 gtgttgtgaattcgggactcaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 6095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 49199385 - 49199446
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaa 250  Q
    |||||||||||||||||||||||  |||||||| ||||||||||| |||||||||| ||||||    
T  49199385 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagat-aaagagagtagagaaaa 49199446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 36019085 - 36019013
Alignment:
Q  199 caaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||||||  |||||||| ||||||||||| |||||||||| | ||||||| |||||||||| |||||||    
T  36019085 caaaaccacaatctaaccaaaggataaacaagat-aaagagagtagaaaaaagataacaacaccaaaaaatgtt 36019013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 40913647 - 40913581
Alignment:
Q  59 gtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||||||| |||||||||||||||||||||||||| |||  || || ||||||| |||||||||    
T  40913647 gtgttgtgaattcggactcaaatttcacaccaatacaaacaata--atgtgcggagcaagtatcaatgg 40913581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 55301756 - 55301825
Alignment:
Q  58 tgtgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatg 126  Q
    |||||||||||||| | |||||||||||||||||||||||| |||| ||  |||||||||| ||||||||    
T  55301756 tgtgttgtgaattccggactcaaatttcacaccaatacaaattatatgaggtgtggagcaagtatcaatg 55301825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 46173628 - 46173525
Alignment:
Q  167 tatatagacctagtctataatc-aagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagag-taaagaaaagatcacaacaccaa 264  Q
    |||||| ||||| ||||||| | |||||||||||||||||||||| |||| ||   ||||||||||| ||||| ||  ||||||||||| ||||||||||    
T  46173628 tatataaacctattctataaaccaagtgcatagcaaaaccacaatccaactaagaaataaacaagat-aaagaaagcaaaagaaaagataacaacaccaa 46173530  T
Q  265 gaaat 269  Q
    |||||    
T  46173529 gaaat 46173525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 29196189 - 29196245
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| ||||||||| |||||||||||||||||||  ||| |||||||||||    
T  29196189 tgttgtgaattcggactcaaatctcacaccaatacaaactat--gatgtgtggagcaaa 29196245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 40913544 - 40913497
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaa 235  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||||    
T  40913544 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaa 40913497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 43403660 - 43403707
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaa 235  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||||    
T  43403660 caagtgcatagcaaaaccacaatctaaccaaaggataaacaagataaa 43403707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 43401717 - 43401778
Alignment:
Q  188 caagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaa 250  Q
    |||||||||||||||| ||||||  |||||||| ||||||||||| |||||||||| ||||||    
T  43401717 caagtgcatagcaaaatcacaatctaaccaaaggataaacaagat-aaagagagtagagaaaa 43401778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 34491557 - 34491495
Alignment:
Q  63 tgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    ||||||||| ||||||||||| ||||||||||||||||||  || |||||||||| ||| |||||    
T  34491557 tgtgaattcggactcaaattttacaccaatacaaactata--atgtgtggagcaagtattaatgg 34491495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 43403530 - 43403596
Alignment:
Q  60 tgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||| | ||| ||||||||||||||||||||||||  ||| |||||||||| |||||||||    
T  43403530 tgttgtgaattccggactaaaatttcacaccaatacaaactat--gatgtgtggagcaagtatcaatgg 43403596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 4570272 - 4570229
Alignment:
Q  60 tgttgtgaattctga-ctcaaatttcacaccaatacaaactata 102  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  4570272 tgttgtgaattctgaactcaaatttcacaccaatacaaattata 4570229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 29813430 - 29813374
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| ||||||||  |||||||||||||||||||  ||| |||||||||||    
T  29813430 tgttgtgaattcggactcaaaactcacaccaatacaaactat--gatgtgtggagcaaa 29813374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 43401601 - 43401653
Alignment:
Q  73 gactcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaatgg 127  Q
    |||||||||||||||||||||| ||||||  ||| |||||||||| |||||||||    
T  43401601 gactcaaatttcacaccaataccaactat--gatctgtggagcaagtatcaatgg 43401653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 4160059 - 4160100
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactat 101  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  4160059 tgttgtgaattcggactcaaaactcacaccaatacaaactat 4160100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 761211 - 761157
Alignment:
Q  60 tgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    |||||||||||| |||||||||  ||||||||||||||||||  ||| |||||||||||    
T  761211 tgttgtgaattcggactcaaat--cacaccaatacaaactat--gatgtgtggagcaaa 761157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 9666269 - 9666325
Alignment:
Q  59 gtgttgtgaattctgactcaaatttcacaccaatacaaactatacgatatgtggagcaaa 118  Q
    ||||||||||||| |||||||| | ||||||||||||||||||  ||| |||||||||||    
T  9666269 gtgttgtgaattcggactcaaaat-cacaccaatacaaactat--gatctgtggagcaaa 9666325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 17927 - 18007
Alignment:
Q  192 tgcatagcaaaaccacaattcaaccaaagca-taaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    |||||||||||||||||||  |||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  17927 tgcatagcaaaaccacaatctaaccaaaggaataaacaagataaa-gagagtaaagaaaagataacaacaccaagaaatgtt 18007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 17793 - 17857
Alignment:
Q  60 tgttgtgaattctg-actcaaatttcacaccaatacaaactatacgatatgtggagcaaatatcaat 125  Q
    |||| ||||||||| ||||||||||||||||||||||||||||  ||| |||| ||||| |||||||    
T  17793 tgttatgaattctggactcaaatttcacaccaatacaaactat--gatgtgtgtagcaagtatcaat 17857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 272
Target Start/End: Complemental strand, 10740 - 10653
Alignment:
Q  185 aatcaagtgcatagcaaaaccacaattcaaccaaagcataaacaagataaaagagagtaaagaaaagatcacaacaccaagaaatgtt 272  Q
    ||||||||| |||| ||||| |||||  || ||||| |||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  10740 aatcaagtgtatagtaaaactacaatctaatcaaagaataaacaagataaaagagagtagaggaaagataacaacaccaagaaatgtt 10653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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