View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17629_low_20 (Length: 242)

Name: NF17629_low_20
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17629_low_20
NF17629_low_20
[»] chr6 (3 HSPs)
chr6 (20-227)||(21544813-21545018)
chr6 (72-114)||(34704069-34704111)
chr6 (51-103)||(18332519-18332571)
[»] chr2 (2 HSPs)
chr2 (20-95)||(39356706-39356781)
chr2 (49-90)||(41579292-41579333)
[»] chr3 (4 HSPs)
chr3 (51-114)||(19468818-19468881)
chr3 (21-114)||(9460601-9460694)
chr3 (25-114)||(29134424-29134512)
chr3 (49-90)||(43808757-43808798)
[»] chr1 (2 HSPs)
chr1 (21-114)||(51387034-51387126)
chr1 (49-90)||(22370338-22370379)
[»] chr7 (1 HSPs)
chr7 (20-92)||(48846847-48846919)
[»] chr4 (2 HSPs)
chr4 (51-114)||(47866581-47866643)
chr4 (70-120)||(19514456-19514506)
[»] chr5 (1 HSPs)
chr5 (70-119)||(24118448-24118497)
[»] scaffold0007 (2 HSPs)
scaffold0007 (70-119)||(35666-35715)
scaffold0007 (70-119)||(40979-41028)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 21544813 - 21545018
Alignment:
Q  20 aataggagggaaattttttagggttgtatggattagcatttaatgacaaattattagagggaaaaattaggtttagaggttgcaagacctaataaacttt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21544813 aataggagggaaattttttagggttgtatggattagcatttaatgacagattattagagggaaaaattaggtttagaggttgcaagacctaataaacttt 21544912  T
Q  120 tgcggtttagccattctgtgtatctcttcctgannnnnnnngtatgtctagttccaggaggaattagaacccatggtcatctatgaaagaatagtctaat 219  Q
     ||||||||||||||||||||||||||||||||        |  |||||||||||| |||||||||||| |||||||||||||||||||||||||||||     
T  21544913 cgcggtttagccattctgtgtatctcttcctgattttttttg--tgtctagttccaagaggaattagaatccatggtcatctatgaaagaatagtctaac 21545010  T
Q  220 caagaatt 227  Q
    ||||||||    
T  21545011 caagaatt 21545018  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 34704111 - 34704069
Alignment:
Q  72 attagagggaaaaattaggtttagaggttgcaagacctaataa 114  Q
    ||||||||||||||||||||||||  || ||||||||||||||    
T  34704111 attagagggaaaaattaggtttagtagtagcaagacctaataa 34704069  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 18332519 - 18332571
Alignment:
Q  51 attagcatttaatgacaaattattagagggaaaaattaggtttagaggttgca 103  Q
    ||||||||||||||| | || ||||||||||||||||||| |||  |||||||    
T  18332519 attagcatttaatgatagataattagagggaaaaattagggttaatggttgca 18332571  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 39356781 - 39356706
Alignment:
Q  20 aataggagggaaattttttagggttgtatggattagcatttaatgacaaattattagagggaaaaattaggtttag 95  Q
    |||||||||||||| | |||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  39356781 aataggagggaaatatattagggttatgtggattagcaattaatgacagattattagagggaaaaattaggtttag 39356706  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 41579333 - 41579292
Alignment:
Q  49 ggattagcatttaatgacaaattattagagggaaaaattagg 90  Q
    ||||||||| |||||||||  |||||||||||||||||||||    
T  41579333 ggattagcaattaatgacaggttattagagggaaaaattagg 41579292  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 19468881 - 19468818
Alignment:
Q  51 attagcatttaatgacaaattattagagggaaaaattaggtttagaggttgcaagacctaataa 114  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||    
T  19468881 attagcaattaatgacagattagtagagggaaaaattaggtttagtgcttgcaagacctaataa 19468818  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 9460694 - 9460601
Alignment:
Q  21 ataggagggaaattttttagggttgtatggattagcatttaatgacaaatta-ttagagggaaaaattaggtttagaggttgcaagacctaataa 114  Q
    ||||||||||||| ||||||| |||||||  |||||||||||||| | || | |||||||||||||||||| |||  ||||||| ||||||||||    
T  9460694 ataggagggaaatattttaggattgtatgc-ttagcatttaatgatagataaattagagggaaaaattagggttaatggttgcatgacctaataa 9460601  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 29134512 - 29134424
Alignment:
Q  25 gagggaaattttttagggttgtatggattagcatttaatgacaaattattagagggaaaaattaggtttagaggttgcaagacctaataa 114  Q
    ||||||||| ||||||| |||||||  |||||||||||||| | || ||||||||||||||||||| |||  ||||||| || |||||||    
T  29134512 gagggaaatattttaggattgtatgc-ttagcatttaatgatagataattagagggaaaaattagggttaatggttgcatgatctaataa 29134424  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 43808757 - 43808798
Alignment:
Q  49 ggattagcatttaatgacaaattattagagggaaaaattagg 90  Q
    ||||||||| |||||||||  |||||||||||||||||||||    
T  43808757 ggattagcaattaatgacagcttattagagggaaaaattagg 43808798  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 51387034 - 51387126
Alignment:
Q  21 ataggagggaaattttttagggttgtatggattagcatttaatgacaaattattagagggaaaaattaggtttagaggttgcaagacctaataa 114  Q
    ||||||||||||| ||||||| |||||||  |||||||||||||  | || ||||||||||||||||||| |||  ||||||| ||||||||||    
T  51387034 ataggagggaaatattttaggattgtatgc-ttagcatttaatgttagataattagagggaaaaattagggttaatggttgcatgacctaataa 51387126  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 22370379 - 22370338
Alignment:
Q  49 ggattagcatttaatgacaaattattagagggaaaaattagg 90  Q
    ||||||||| |||||||||  |||||||||||||||||||||    
T  22370379 ggattagcaattaatgacagcttattagagggaaaaattagg 22370338  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 48846847 - 48846919
Alignment:
Q  20 aataggagggaaattttttagggttgtatggattagcatttaatgacaaattattagagggaaaaattaggtt 92  Q
    |||||||||||||| ||  |||||||| |  ||||||||||||||||| |||| | |||||||||||||||||    
T  48846847 aataggagggaaatattggagggttgtttccattagcatttaatgacatattagtggagggaaaaattaggtt 48846919  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 47866581 - 47866643
Alignment:
Q  51 attagcatttaatgacaaattattagagggaaaaattaggtttagaggttgcaagacctaataa 114  Q
    ||||||| ||||||||| |||| || ||||||||||||||||||| | ||||||||||||||||    
T  47866581 attagcaattaatgacatattagta-agggaaaaattaggtttagtgcttgcaagacctaataa 47866643  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 19514506 - 19514456
Alignment:
Q  70 ttattagagggaaaaattaggtttagaggttgcaagacctaataaactttt 120  Q
    ||||||||||||||||||||||| | |||||||||||||| |||| |||||    
T  19514506 ttattagagggaaaaattaggttaaaaggttgcaagaccttataagctttt 19514456  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 24118497 - 24118448
Alignment:
Q  70 ttattagagggaaaaattaggtttagaggttgcaagacctaataaacttt 119  Q
    ||||||||||||||||||||||| | |||||||||||||| |||| ||||    
T  24118497 ttattagagggaaaaattaggttaaaaggttgcaagaccttataagcttt 24118448  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 35715 - 35666
Alignment:
Q  70 ttattagagggaaaaattaggtttagaggttgcaagacctaataaacttt 119  Q
    ||||||||||||||||||| ||| | |||||||||||||| |||| ||||    
T  35715 ttattagagggaaaaattatgttaaaaggttgcaagaccttataagcttt 35666  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 41028 - 40979
Alignment:
Q  70 ttattagagggaaaaattaggtttagaggttgcaagacctaataaacttt 119  Q
    ||||||||||||||||||| ||| | |||||||||||||| |||| ||||    
T  41028 ttattagagggaaaaattatgttaaaaggttgcaagaccttataagcttt 40979  T

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