View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_low_21 (Length: 241)
Name: NF17629_low_21
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 56402054 - 56401818
Alignment:
| Q |
2 |
gttcagtgtgcaataacatgaaattacatctaaaacgcataaaaacattatctaaagacacaaggatcaaagttctcttttccccttgaacaaagcatat |
101 |
Q |
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| T |
56402054 |
gttcagtgtgcaataacatgaaattacatctaaaacgcataaaaacattatctaaagacacaaggatcaaagttctcttttccccttgaacaaagcatat |
56401955 |
T |
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| Q |
102 |
ttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaacattcaacggtcttgtaggtatactagccagtggccaatacaactcattc |
201 |
Q |
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| T |
56401954 |
ttttcagctgcaactaagaagtatcaaaatgatgaaaattataaaagaaacattcaagggtcttgtaggtatactagccagtggccaatacaactcattc |
56401855 |
T |
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| Q |
202 |
acatcatataatacttgatggttctactttatagtat |
238 |
Q |
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| T |
56401854 |
acatcatataatacttgatggttctactttatagtat |
56401818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 11319332 - 11319416
Alignment:
| Q |
67 |
atcaaagttctcttttccccttgaacaaagcatatttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaac |
152 |
Q |
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| T |
11319332 |
atcagagttctattttcccat-gaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaagaaac |
11319416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 11477353 - 11477437
Alignment:
| Q |
67 |
atcaaagttctcttttccccttgaacaaagcatatttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaac |
152 |
Q |
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| T |
11477353 |
atcagagttctattttcccat-gaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaagaaac |
11477437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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