View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_low_24 (Length: 225)
Name: NF17629_low_24
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 28721712 - 28721915
Alignment:
| Q |
1 |
ttaagtggaaataaccttctttttaccaaaaataatggtaggagcaccacactaaatatattaacccnnnnnnnnnn--gggactaggccaaggaccttt |
98 |
Q |
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| T |
28721712 |
ttaagtggaaataaccttctttttaccaaaaataatggtaggagcaccacactaaatatattaacccaaaaaaaaaaaagggactaggccaaggaccttt |
28721811 |
T |
|
| Q |
99 |
tcaagaggtaataaagtcaggtaaatctatctataaaacta---aagaaaaggaaagggtaaggccaaaattgatcaacatatcagcacaaacattctct |
195 |
Q |
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| T |
28721812 |
tcaagaggtaataaagtcaggtaaatctatccataaaactaaagaagaaaaggaaagggtatggccaaaattgatcaacatatcagcacaaacattctct |
28721911 |
T |
|
| Q |
196 |
tccc |
199 |
Q |
| |
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|||| |
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| T |
28721912 |
tccc |
28721915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 37311707 - 37311643
Alignment:
| Q |
109 |
ataaagtcaggtaaatctatctataaaactaa---agaaaaggaaagggtaaggccaaaattgat |
170 |
Q |
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||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||| ||||| |
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| T |
37311707 |
ataaagtcatgtaaatctatctataaagctaaagtagaaaaggaaagggcaaggccaaatttgat |
37311643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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