View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17629_low_6 (Length: 376)
Name: NF17629_low_6
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17629_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 53123371 - 53123740
Alignment:
| Q |
1 |
acataagtgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttcataataccaagaagtttagttccatctgtatttgcctcttcactg |
100 |
Q |
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| T |
53123371 |
acataagtgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttcataataccaagaagttcagttccatctgtatttgcctcttcactg |
53123470 |
T |
|
| Q |
101 |
gttttggttttctcttatacgctggtgaattgctcccaaagggtattagccttttgagaccattttccagaatagttttgttttgtagtatccgggttgg |
200 |
Q |
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| T |
53123471 |
gttttggttttctcttatacgctggtgaattgctcccaaagggtattagccttttgagaccattttccagaatagttttgttttgtagtatccgggttgg |
53123570 |
T |
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| Q |
201 |
atttgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttttgggaagaatagatactgaacagcacaacgaaccacc |
300 |
Q |
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| T |
53123571 |
attcgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttttgggaagaatagatactgaacagcacaacgaaccacc |
53123670 |
T |
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| Q |
301 |
aatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaataatctaccca |
370 |
Q |
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| T |
53123671 |
aatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaatgatcttccca |
53123740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 6504682 - 6504730
Alignment:
| Q |
8 |
tgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttca |
56 |
Q |
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| T |
6504682 |
tgcaaaatctgaggcacacaagtaaaatgaagatattgaagacctttca |
6504730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 6505046 - 6505112
Alignment:
| Q |
197 |
ttggatttgaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttt |
263 |
Q |
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| T |
6505046 |
ttggacttgaaccaagcatatggttttcttttgtcaaagctacttggagtgtctttgaggcaatttt |
6505112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 6505155 - 6505246
Alignment:
| Q |
273 |
tagatactgaacagcacaacgaaccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaataatct |
365 |
Q |
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| T |
6505155 |
tagataccaaacaacacaacgaatcacgaatgc-aaagagaacagaaccaattaatccagtaacagctcctaaaactatgctaataataatct |
6505246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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