View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17629_low_9 (Length: 350)

Name: NF17629_low_9
Description: NF17629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17629_low_9
NF17629_low_9
[»] chr7 (1 HSPs)
chr7 (3-331)||(3087170-3087498)
[»] chr6 (8 HSPs)
chr6 (182-250)||(4557956-4558024)
chr6 (178-325)||(4299050-4299197)
chr6 (182-250)||(4586467-4586535)
chr6 (188-234)||(4612957-4613003)
chr6 (178-231)||(4626801-4626854)
chr6 (182-239)||(4571814-4571871)
chr6 (182-327)||(4622894-4623039)
chr6 (188-240)||(4599011-4599063)
[»] chr8 (1 HSPs)
chr8 (182-250)||(16685519-16685587)
[»] scaffold0477 (1 HSPs)
scaffold0477 (190-231)||(3930-3971)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 331
Target Start/End: Complemental strand, 3087498 - 3087170
Alignment:
Q  3 aactctttgtcaaacacttttcaacacactctttctgatttacattcatgagtcccacataatttgacgagactcataaatgttaaccaatnnnnnnngt 102  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||| |       ||    
T  3087498 aactctttgtcaaacacttttcaacgcactctttctgattaacattcatgagtcccacataatttaacgaaactcataaatgtaaaccagtgaaaaaagt 3087399  T
Q  103 gtgttagaaagcgttagagagtgtattcctagtaagctattgacttcttctataattatgacaagcagatgagatttta-gacaccaaagtagactgtat 201  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||  ||| ||| ||||||||||||    
T  3087398 gtgttagaaagcgtt-gagagtgtattcctagcaagctattgacttcttctataattatgacaagcatatgagagtttctgacgccagagtagactgtat 3087300  T
Q  202 tccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaatttgtcattgaagtgggggat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087299 tccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaatttgtcattgaagtgggggat 3087200  T
Q  302 agcttacacaaagcctctgctattatcttt 331  Q
    ||||||||||||||||||||||||||||||    
T  3087199 agcttacacaaagcctctgctattatcttt 3087170  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 4558024 - 4557956
Alignment:
Q  182 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 250  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4558024 gacactaaagtggattgtattccaggattgcagaactttcgactgaaggatctgcctgactttataagg 4557956  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 325
Target Start/End: Original strand, 4299050 - 4299197
Alignment:
Q  178 tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta 277  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| |||| |||||  ||||| | ||||||  |  | ||| ||| |||  |||  ||    
T  4299050 tttagacatcaaactagactgtattccaggattgcagaactttcgattgaaagatctaactgactttataaggagtacaaatccaaatgatgtcatggta 4299149  T
Q  278 gaatttgtcattgaagtgggggatagcttacacaaagcctctgctatt 325  Q
    ||||||| |||||||| ||  ||||| || |||||||| |||||||||    
T  4299150 gaatttgccattgaagcggcagatagatttcacaaagcatctgctatt 4299197  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 4586535 - 4586467
Alignment:
Q  182 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 250  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| | ||||||    
T  4586535 gacactaaagtggactgtattccaggattggagaactttcgactaaaggatttgcctgactttataagg 4586467  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 4612957 - 4613003
Alignment:
Q  188 aaagtagactgtattccaggattgcagaactttcgactgaaggatct 234  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  4612957 aaagtggactgtattcaaggattgcagaactttcgactgaaggatct 4613003  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 4626854 - 4626801
Alignment:
Q  178 tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaagga 231  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||    
T  4626854 tttagacaccaaactagattgtattcccggattgcagaactttcggctgaagga 4626801  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 4571871 - 4571814
Alignment:
Q  182 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctg 239  Q
    ||||| ||||| |||||||| |||||| || ||||||||||||||| |||| ||||||    
T  4571871 gacactaaagtggactgtatgccaggactgaagaactttcgactgagggatttgcctg 4571814  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 327
Target Start/End: Complemental strand, 4623039 - 4622894
Alignment:
Q  182 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 281  Q
    |||||| ||||||||||| |||| |||||| ||||||||||  | |||||| |||||||| | |||||| ||  ||| | ||| |||  |||  ||||||    
T  4623039 gacaccgaagtagactgtgttcctggattgaagaactttcggttaaaggatttgcctgactttataaggattacagagccaaatgatgtcatggtagaat 4622940  T
Q  282 ttgtcattgaagtgggggatagcttacacaaagcctctgctattat 327  Q
    || ||||||||| ||  ||  | || |||||| |||||||||||||    
T  4622939 ttctcattgaagcggcagaacgatttcacaaatcctctgctattat 4622894  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 4599063 - 4599011
Alignment:
Q  188 aaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctga 240  Q
    |||||||| |||||||| ||| |||| |||||||||||||| ||||| |||||    
T  4599063 aaagtagattgtattcctggactgcaaaactttcgactgaaagatcttcctga 4599011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 16685519 - 16685587
Alignment:
Q  182 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 250  Q
    ||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||    
T  16685519 gacactaaagtggactgtattccaggattgcagaatattcgactgaaggatctgcctgactttataagg 16685587  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 3930 - 3971
Alignment:
Q  190 agtagactgtattccaggattgcagaactttcgactgaagga 231  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  3930 agtagacggtattccaggattgcagaactttcggctgaagga 3971  T

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