View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_high_14 (Length: 288)
Name: NF1762_high_14
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 9147451 - 9147709
Alignment:
| Q |
4 |
cagaagtttccacttaatatgtccaacaaaaaccatccatgcatgatcatgcatctactacttaaataaaattgctccatttgtcttcctttccattttg |
103 |
Q |
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| T |
9147451 |
cagaagtttccacttaatatgtccaacaaaaaccatccatgcatgatcatgcatctactacttaaataaaattgctccatttgtcttcctttccattttg |
9147550 |
T |
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| Q |
104 |
gtttggatttgaaaaacaatatattatatatgcatgtgtgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagat |
203 |
Q |
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| T |
9147551 |
gtttggatttgaaaaacaatatattatatgtgcatgtgtgtgggtatatgtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagat |
9147650 |
T |
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| Q |
204 |
ttactctactaatagaattgcacatatttgcatatggtcctgagcctcttaatttgcgg |
262 |
Q |
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| T |
9147651 |
ttactctactaatagaactacatatatttgcatatggtcctgcgcctcttaatttgcgg |
9147709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 44 - 259
Target Start/End: Original strand, 9141359 - 9141576
Alignment:
| Q |
44 |
gcatgatcatgcatctactacttaaataaaattgctc--catttgtcttcctttccattttggtttggatttgaaaaacaatatattatatatgcatgtg |
141 |
Q |
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| T |
9141359 |
gcatgatcatgcatctactacttaaataaaattgctctccatctgtcttcctttccatctaggtttggaattgaaaaacaagatattatatatgcatgtg |
9141458 |
T |
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| Q |
142 |
tgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaattgcacatatttgcatatggt |
241 |
Q |
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| T |
9141459 |
tgtgggtatatgtgtgatattgttatgtaagaactttatgtattgttaataaataaagagatttcctctactaatagaactgcacatatttgcatatggt |
9141558 |
T |
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| Q |
242 |
cctgagcctcttaatttg |
259 |
Q |
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| T |
9141559 |
cctgcgcctctttatttg |
9141576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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