View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1762_high_23 (Length: 239)

Name: NF1762_high_23
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1762_high_23
NF1762_high_23
[»] chr1 (4 HSPs)
chr1 (1-226)||(38468240-38468465)
chr1 (3-175)||(38448423-38448600)
chr1 (3-175)||(38549671-38549848)
chr1 (179-226)||(38549025-38549070)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38468240 - 38468465
Alignment:
Q  1 tttagttgtgttcacttgctttggaggtccttaatttacttttnnnnnnnttaaataggtctcttaaaataagaggcttcaaccaaataacgaattgttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38468240 tttagttgtgttcacttgctttggaggtccttaatttacttttaaaaaaattaaataggtctcttaaaataagagacttcaaccaaataacgaattgttc 38468339  T
Q  101 ataatcagagggtcagcataaaaatgcttcaaatgatgacatttgttgaagaataaaatttggtgaaatttattttgtgattcgaagataaatactcaag 200  Q
    | |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38468340 agaatcggaaggtcaacataaaaatgcttcaaatgatgacatttgttgaagaataaaatttggtgaaatttattttgtgattcgaagataaatactcaag 38468439  T
Q  201 atatggaatgattttgtgaatcaatt 226  Q
    ||||||||||||||||||||||||||    
T  38468440 atatggaatgattttgtgaatcaatt 38468465  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 38448423 - 38448600
Alignment:
Q  3 tagttgtgttcacttgctttggaggtccttaatttacttttnnnnnnnttaaataggtctcttaaaataagaggcttcaaccaaataacgaattgttc-- 100  Q
    |||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||| ||| ||||||||||||||||||||||||||      
T  38448423 tagttgtgttcacttgctttggaggtacttaatttacttttaaaaaaattaaataggtctcttaaaaaaagcggcttcaaccaaataacgaattgttcgg 38448522  T
Q  101 ataatcagagggtcagcataaaaatgcttcaaatgat---gacatttgttgaagaataaaatttggtgaaatttattt 175  Q
    | |||| |||||| | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  38448523 agaatcggagggtaaacataaaaatacttcaaatgattaagacatttgttgaagaataaaatttggtgaaattcattt 38448600  T

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Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 175
Target Start/End: Complemental strand, 38549848 - 38549671
Alignment:
Q  3 tagttgtgttcacttgctttggaggtccttaatttacttttnnnnnnnttaaataggtctcttaaaataagaggcttcaaccaaataacgaattgttc-- 100  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||| ||| ||||||||||||||||| ||||||||      
T  38549848 tagttgtgttcacttgctttggaggtccttaatttacttttaaaaaaattaaacaggtctcttaaaaaaagcggcttcaaccaaataacaaattgttcgg 38549749  T
Q  101 ataatcagagggtcagcataaaaatgcttcaaatgat---gacatttgttgaagaataaaatttggtgaaatttattt 175  Q
    | |||| |||||| | ||||||||| |||||||||||   ||||||||||||||||||||||||||||||||| ||||    
T  38549748 agaatcggagggtaaacataaaaatacttcaaatgattaagacatttgttgaagaataaaatttggtgaaattcattt 38549671  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 38549070 - 38549025
Alignment:
Q  179 gattcgaagataaatactcaagatatggaatgattttgtgaatcaatt 226  Q
    ||||| |||||||||||||||||||  |||||||||||||||||||||    
T  38549070 gattctaagataaatactcaagata--gaatgattttgtgaatcaatt 38549025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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