View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_high_31 (Length: 220)
Name: NF1762_high_31
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 39949081 - 39948965
Alignment:
| Q |
14 |
cataggcattatggttagtcaaatatataactaagttactatcaaatcaccacataaaccatactatatatttttatacatttgtttacttttcaaggcc |
113 |
Q |
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| T |
39949081 |
catagacattatggttagtcaaatatataactaagttactatcaaatcaccacataaaccatactatatatttttatacatttgtttacttttcaaggcc |
39948982 |
T |
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| Q |
114 |
aacagaaaggtcggttg |
130 |
Q |
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| T |
39948981 |
aacagaaaggtcggttg |
39948965 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 39948942 - 39948890
Alignment:
| Q |
152 |
tgagacctggacttttgtagtggataatgatttctcttatcattgttagattc |
204 |
Q |
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| T |
39948942 |
tgaggcctgaacttttgtagtggataatgatttctcttatcattgttagattc |
39948890 |
T |
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