View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_high_7 (Length: 364)
Name: NF1762_high_7
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 48006363 - 48006651
Alignment:
| Q |
1 |
ttttgcatccaaattctaaagggagtaaatggagcatattgaactcattaaaaacaggctatcttgtaaaactggagagtctcccttatcataaacaaca |
100 |
Q |
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|||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48006363 |
ttttgcatccaaatcctaaatagagtaaatggagcataccgaactcattaaaaagaggctatcttgtaaaactggagagtctcccttatcataaacaaca |
48006462 |
T |
|
| Q |
101 |
aagaacgtgagctaaaattatgggaagatatgatatagttaattagtgnnnnnnnnnnnnggtagaggatg----tagttagttcttgggcta--nnnnn |
194 |
Q |
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| T |
48006463 |
aagaacgtgagctaaaattatgggaagatatgatatagttaattagtgtttttcttttttggtagaggatgtagttagttagttcttgggctattttttt |
48006562 |
T |
|
| Q |
195 |
nnnngaaggatagtacttggtgtacttgttacccttttttatcgtaatttctttgttattnnnnnnnntatgctggcgtcatttaaaaa |
283 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
48006563 |
ttttgaaggatagtacttagtgtacttgttacccttttttatcgtaatttctttgttattaaaaaaaatatgctggtgtcatttaaaaa |
48006651 |
T |
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