View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1762_high_8 (Length: 349)

Name: NF1762_high_8
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1762_high_8
NF1762_high_8
[»] chr4 (1 HSPs)
chr4 (250-322)||(22524641-22524712)
[»] chr3 (1 HSPs)
chr3 (250-322)||(11653590-11653661)
[»] chr2 (2 HSPs)
chr2 (250-322)||(35058909-35058980)
chr2 (25-96)||(23259715-23259786)
[»] chr1 (1 HSPs)
chr1 (11-93)||(31460063-31460145)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 22524712 - 22524641
Alignment:
Q  250 atcttcaacttaagaggagtttctatcaacatagcggcctcattcaagtaactttaaaagaatgcatccttgg 322  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  22524712 atcttcaacttaagag-agtttctatcaacatagtagcctcattcaagtaactttaaaagaatgcatccttgg 22524641  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 11653590 - 11653661
Alignment:
Q  250 atcttcaacttaagaggagtttctatcaacatagcggcctcattcaagtaactttaaaagaatgcatccttgg 322  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  11653590 atcttcaacttaagag-agtttctatcaacatagtagcctcattcaagtaactttaaatgaatgcatccttgg 11653661  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 35058909 - 35058980
Alignment:
Q  250 atcttcaacttaagaggagtttctatcaacatagcggcctcattcaagtaactttaaaagaatgcatccttgg 322  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  35058909 atcttcaacttaagag-agtttctatcaacatagtagcctcattcaagtaactttaaaagaatgcatcattgg 35058980  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 23259715 - 23259786
Alignment:
Q  25 cccactattcaacctctatagaccgagtcaaaggcacatgcgtttcatgtggggacttggtcaaagcacaac 96  Q
    ||||||| || |||| | ||||| |||||||||||||||| |||| ||||||||| || ||||||| |||||    
T  23259715 cccactactctacctatctagactgagtcaaaggcacatgtgttttatgtggggatttagtcaaagtacaac 23259786  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 31460063 - 31460145
Alignment:
Q  11 ggatcaggggatctcccactattcaacctctatagaccgagtcaaaggcacatgcgtttcatgtggggacttggtcaaagcac 93  Q
    |||||| |||| || || ||| || |||||| ||||||||||||||  |||||| |||||||||| |||||| ||||||||||    
T  31460063 ggatcatgggacctacctctactccacctctctagaccgagtcaaaaacacatgtgtttcatgtgaggacttagtcaaagcac 31460145  T

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