View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_11 (Length: 332)
Name: NF1762_low_11
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 50681100 - 50681311
Alignment:
| Q |
1 |
attaacgttgctctcaagaagcttgaagtttgtagaactttggctgaaggaaccaaagcaattattaatttgggtcttgaaaatgttcatgttcctgagt |
100 |
Q |
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| T |
50681100 |
attaacgttgctctcaagaagcttgaaggttgtagaactttgggtgaaggaaccaaagcaattattaatttgggtcttgaaaatgttcatgttcctgagt |
50681199 |
T |
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| Q |
101 |
gtgcttatgttttgttgcgtggcttttgtttgaatgataacatattgtatcactacttggttcggtt-----gacactaggaaaatagacaacaataatt |
195 |
Q |
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| T |
50681200 |
gtgcttatgttttgttgcgtggcttttgtttgaatgataacatattgtatcactgcttggttcggctcggctgacactaggaaaataaacaacaataatt |
50681299 |
T |
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| Q |
196 |
ccgtgtatttta |
207 |
Q |
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|| |||| |||| |
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| T |
50681300 |
ccttgtagttta |
50681311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 50681305 - 50681408
Alignment:
| Q |
228 |
tagtttaattaacgagtaaatacccaagttccagaactaattagggtattatttgagg------gttgttgttgttgtgataggtttgtatttgttgatg |
321 |
Q |
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| T |
50681305 |
tagtttaattaacgagtaaatacccaagttccagaactaattagggtattatttgagggttgttgttgttgttgttgtgataggtttgtatttgttgatg |
50681404 |
T |
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| Q |
322 |
atgt |
325 |
Q |
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|||| |
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| T |
50681405 |
atgt |
50681408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 95 - 257
Target Start/End: Complemental strand, 47893060 - 47892898
Alignment:
| Q |
95 |
ctgagtgtgcttatgttttgttgcgtggcttttgtttgaatgataacatattgtatcactacttggttcggttgacactaggaaaatagacaacaataat |
194 |
Q |
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| T |
47893060 |
ctgagtgtgcttatgtctcgttgcatggcttttgtttgaatgataatatactgtatcactacttgcttcggttgacactaggaaaatagacaacaaccat |
47892961 |
T |
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| Q |
195 |
tccgtgtattttatggttagatatgcatatgtttagtttaattaacgagtaaatacccaagtt |
257 |
Q |
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||| ||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||| |
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| T |
47892960 |
tccttgtattttatggttagatatgcatatgattactgtaattagtgagtaaatacccaagtt |
47892898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 47893626 - 47893536
Alignment:
| Q |
7 |
gttgctctcaagaagcttgaagtttgtagaactttggctgaaggaaccaaagcaattattaatttgggtcttgaaaatgttcatgttcctg |
97 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
47893626 |
gttgctctcaagaagcttgaaggttgtagaactttggctgaaggaaccaaagcaattatcaatttgggtcttgaaaatgttcctgttcctg |
47893536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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