View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_12 (Length: 331)
Name: NF1762_low_12
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 6170968 - 6171298
Alignment:
| Q |
1 |
atagaaaaacgaagagatataaactccaacgtgcaaaggttaaagagggagaccgcaacttaaaaacaccaatagcaaaaactcgtgagtaccagagcaa |
100 |
Q |
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| T |
6170968 |
atagaaaaacgaagagatataaactccaacgtgcaaaggttaaagagggagaccgcaacttaaaaacaccaatagcaaaaactcgtgagtaccagagcaa |
6171067 |
T |
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| Q |
101 |
gacataaccagtagggcaacgaaaaccaaacacccgacaaacaaacacaacctaaatcggccgttgctcaagctcaaccgtcaccaatttcgcaaaaaag |
200 |
Q |
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| T |
6171068 |
gacataaccagtagggcaacgaaaaccaaacacccgacaaacaaacacaacctaaatcggtcgttgctcaagctcaaccgtcaccaatttcgcaaaaaag |
6171167 |
T |
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| Q |
201 |
atcaattcattcagggacatttaaatggactacacgaccaaataagttgatatattatttgcatgattgaatccatgacatgttaattaaaatacagttt |
300 |
Q |
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| T |
6171168 |
atcaattcattcagggacatttaaatggactacacgaccaaataagttgatatattatttgcatgattgaatctatgacatgttaattaaaatacagttt |
6171267 |
T |
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| Q |
301 |
aatagccatataatgttcatgtaaatcaatt |
331 |
Q |
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| T |
6171268 |
aatagccatataatgttcatgtaaatcaatt |
6171298 |
T |
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