View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1762_low_13 (Length: 321)

Name: NF1762_low_13
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1762_low_13
NF1762_low_13
[»] chr2 (9 HSPs)
chr2 (109-286)||(28216069-28216246)
chr2 (1-112)||(28215937-28216048)
chr2 (1-77)||(28220119-28220199)
chr2 (72-104)||(32309083-32309115)
chr2 (72-104)||(32565720-32565752)
chr2 (72-104)||(32799951-32799983)
chr2 (72-104)||(32806905-32806937)
chr2 (72-104)||(32815342-32815374)
chr2 (75-104)||(28215907-28215936)
[»] chr4 (1 HSPs)
chr4 (242-280)||(21453239-21453277)
[»] chr3 (1 HSPs)
chr3 (239-280)||(26774263-26774304)
[»] chr6 (1 HSPs)
chr6 (72-104)||(301237-301269)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 109 - 286
Target Start/End: Original strand, 28216069 - 28216246
Alignment:
Q  109 taaccgtaagattaatctctttaagggattatttatcttctaaacatatgcatcttttttctcattattaaaatttaaactccaattcttcacttatgga 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28216069 taaccgtgagattaatctctttaagggattatttatcttctaaacatatgcatcttttttctcattattaaaatttaaactccaattcttcacttatgga 28216168  T
Q  209 aaacttgtcatatactttccatgttctaggggaactactcactcatcataaggatgagctacctaatgaaaactaaaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28216169 aaacttgtcatatactttccatgttctaggggaactactcactcatcataaggatgagctacctaatgaaaaataaaa 28216246  T

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Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 28215937 - 28216048
Alignment:
Q  1 gatgatgatgatgctggagtgaaggagaagagaatagaagcgggaaagtgaagacttgtttgggaagttattgggttgaagatgaagaatctcctcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215937 gatgatgatgatgctggagtgaaggagaagagaatagaagcaggaaagtgaagacttgtttgggaagttattgggttgaagatgaagaatctcctcattt 28216036  T
Q  101 tctttttataac 112  Q
    ||||||||||||    
T  28216037 tctttttataac 28216048  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28220199 - 28220119
Alignment:
Q  1 gatgatgatgatgctggagtgaaggagaagagaat--agaagcgggaa--agtgaagacttgtttgggaagttattgggtt 77  Q
    |||||| ||||||||||| ||||||||||||| ||  |||||||||||  |||  ||||||||||||||||||||| ||||    
T  28220199 gatgataatgatgctggattgaaggagaagaggataaagaagcgggaaagagtagagacttgtttgggaagttattaggtt 28220119  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 32309115 - 32309083
Alignment:
Q  72 tgggttgaagatgaagaatctcctcattttctt 104  Q
    |||||||||||||||||||||||||||||||||    
T  32309115 tgggttgaagatgaagaatctcctcattttctt 32309083  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 32565720 - 32565752
Alignment:
Q  72 tgggttgaagatgaagaatctcctcattttctt 104  Q
    |||||||||||||||||||||||||||||||||    
T  32565720 tgggttgaagatgaagaatctcctcattttctt 32565752  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 32799951 - 32799983
Alignment:
Q  72 tgggttgaagatgaagaatctcctcattttctt 104  Q
    |||||||||||||||||||||||||||||||||    
T  32799951 tgggttgaagatgaagaatctcctcattttctt 32799983  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 32806905 - 32806937
Alignment:
Q  72 tgggttgaagatgaagaatctcctcattttctt 104  Q
    |||||||||||||||||||||||||||||||||    
T  32806905 tgggttgaagatgaagaatctcctcattttctt 32806937  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 32815342 - 32815374
Alignment:
Q  72 tgggttgaagatgaagaatctcctcattttctt 104  Q
    |||||||||||||||||||||||||||||||||    
T  32815342 tgggttgaagatgaagaatctcctcattttctt 32815374  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 104
Target Start/End: Original strand, 28215907 - 28215936
Alignment:
Q  75 gttgaagatgaagaatctcctcattttctt 104  Q
    ||||||||||||||||||||||||||||||    
T  28215907 gttgaagatgaagaatctcctcattttctt 28215936  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 21453277 - 21453239
Alignment:
Q  242 actactcactcatcataaggatgagctacctaatgaaaa 280  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  21453277 actactcactcatcacaaggatgagctacccaatgaaaa 21453239  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 26774304 - 26774263
Alignment:
Q  239 ggaactactcactcatcataaggatgagctacctaatgaaaa 280  Q
    ||||||||||||||||||||||||||| |||| || ||||||    
T  26774304 ggaactactcactcatcataaggatgaactacgtagtgaaaa 26774263  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 301269 - 301237
Alignment:
Q  72 tgggttgaagatgaagaatctcctcattttctt 104  Q
    ||||||||||||||||||||| |||||||||||    
T  301269 tgggttgaagatgaagaatcttctcattttctt 301237  T

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