View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_14 (Length: 317)
Name: NF1762_low_14
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 2659593 - 2659899
Alignment:
| Q |
1 |
tgttaagcattcatattagtagtttcaactcgtcattggaggaatggagtagatatttaagaaccttcatgagggtattcaactgcattgttctgtctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2659593 |
tgttaagcattcatattagtagtttcaactcgtcattggaggaatggagtagatatttaagaaccttcatgagggtattcaactgcattgttctgtctat |
2659692 |
T |
|
| Q |
101 |
agtattttgccttgtgtgaagtgtgaacatagaattgttctgtctttaaattctgccttataaagtgtgaagtgtggacatatcatgtaaatgaagataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2659693 |
agtattttgccttgtgtgaagtgtgaacatagaattgttctgtctttaaattctgccttataaagtgtgaagtgtggacatatcatgtaaatgaaaataa |
2659792 |
T |
|
| Q |
201 |
gggtagacgcattagccttccactcgacatcttcctttgttagttac---ttttaaatcttagatttgataaagacttgattctctatagttctacttca |
297 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2659793 |
gggtacacgcattagccttccactcaacatcttcctttgttagttacttattttaaatcttaaatttgataaagacttgattctctatagttctacttca |
2659892 |
T |
|
| Q |
298 |
attacct |
304 |
Q |
| |
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||||||| |
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| T |
2659893 |
attacct |
2659899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2718208 - 2718283
Alignment:
| Q |
1 |
tgttaagcattcatattagtagtttcaactcgtcattggaggaatggagtagatatttaagaaccttcatgagggt |
76 |
Q |
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||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
2718208 |
tgttaaggatgcatattagtagtttcaactcgtgattggaggaatgacgtagatatttaagcacctttatgagggt |
2718283 |
T |
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