View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_18 (Length: 250)
Name: NF1762_low_18
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 26225463 - 26225691
Alignment:
| Q |
1 |
tttttatttgtctttctataaaccgtatctcacactcttgaacaaagaatattgaaattatacatcattttataagatactatgttcaaaaaaggactat |
100 |
Q |
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| T |
26225463 |
tttttatttgtctttctataaaccgtatctcacactcttgaacaaagaatattgaaattatacatcatttcataagatactatgttcaaaaaaggactat |
26225562 |
T |
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| Q |
101 |
gaaaagtgtgcctcctaagtcattaatagtgccatttttcaatgctatgtcgtgagaagtgagtatggtgagaaaagaaattctcgaaatcatatacggt |
200 |
Q |
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| T |
26225563 |
gaaaagtgtgcctcctaagtcattaatagtgccatttttcaatgctatgtcgtgagaagtgagtatggtgagaaaagaaattctcaaaatcatatacggt |
26225662 |
T |
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| Q |
201 |
aaacgtcaaattttgttgtaaaatagtga |
229 |
Q |
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| T |
26225663 |
aaacgtcaaatgttgttgtaaaatagtga |
26225691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 24490663 - 24490704
Alignment:
| Q |
51 |
attgaaattatacatcattttataagatactatgttcaaaaa |
92 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||| |
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| T |
24490663 |
attgaaattaaacatcattttataagagactatgttcaaaaa |
24490704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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