View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_2 (Length: 466)
Name: NF1762_low_2
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 25777519 - 25777280
Alignment:
| Q |
21 |
gaatcccaaaggttcacatcacgctaaacttaagtaacacttgggcactctatcaaaacatggatgatgccttcataattacttccacaaagatcacaat |
120 |
Q |
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| T |
25777519 |
gaatcccaaaggttcacatcacgctaaacttaagtaacacttgggcactctatcaaaacatggatgatgccttcataattacttccacaaagatcacaat |
25777420 |
T |
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| Q |
121 |
caagtggccaagacactcctatattattactaaggcgtgctcgagttgggaaccacccatggcacaccctatgaacataattcttgacctgaggaggtac |
220 |
Q |
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| T |
25777419 |
caagtggccaagacactcctatattattactaaggcgtgctcgagttgggaaccacccatggcacaccctatgaacataattcttgacctgaggaggtac |
25777320 |
T |
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| Q |
221 |
tttgagtttccatattaaatttcaccgacctaaaacatgt |
260 |
Q |
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| T |
25777319 |
tttgagtttccatattaaatttcaccgacctaaaacatgt |
25777280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 352 - 457
Target Start/End: Complemental strand, 1538928 - 1538823
Alignment:
| Q |
352 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
451 |
Q |
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| T |
1538928 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
1538829 |
T |
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| Q |
452 |
tattat |
457 |
Q |
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| T |
1538828 |
tattat |
1538823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 352 - 457
Target Start/End: Complemental strand, 17768975 - 17768870
Alignment:
| Q |
352 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17768975 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
17768876 |
T |
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| Q |
452 |
tattat |
457 |
Q |
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|||||| |
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| T |
17768875 |
tattat |
17768870 |
T |
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