View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1762_low_21 (Length: 248)
Name: NF1762_low_21
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 39022634 - 39022414
Alignment:
| Q |
18 |
accttaaggcaataaacattcgtctaaaccaccggttaaaaacttatgagattaactaaatttaataaataatatttcataggaacaaaaacaatgagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39022634 |
accttaaggcaataaacattcgtctaaaccaccggttaaaaacttatgagattaactaaatttaataaataatatttcataggaacaaaaacaatgagat |
39022535 |
T |
|
| Q |
118 |
tcttgtgagttaaatttagacggtgcaagacaatatcagcctagtctgcctagactatataacaaataattatagtctacatgtaaattggaattcattc |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39022534 |
tcttgtgagttaagtttagacggtgcaagacaatatcagcctagtctgcctagactatataacaaataattatagtctacatgtaaattggaattcattc |
39022435 |
T |
|
| Q |
218 |
aataagccaacacaagaataa |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39022434 |
aataagccaacacaagaataa |
39022414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University