View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1762_low_24 (Length: 242)

Name: NF1762_low_24
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1762_low_24
NF1762_low_24
[»] chr1 (2 HSPs)
chr1 (1-135)||(50680984-50681118)
chr1 (136-226)||(37259607-37259697)
[»] scaffold0320 (1 HSPs)
scaffold0320 (8-135)||(20121-20248)
[»] chr4 (3 HSPs)
chr4 (1-135)||(47893614-47893748)
chr4 (135-226)||(11474840-11474931)
chr4 (134-226)||(34454917-34455009)
[»] chr8 (3 HSPs)
chr8 (135-226)||(18775092-18775183)
chr8 (136-226)||(18784042-18784132)
chr8 (176-226)||(17465566-17465616)
[»] chr3 (3 HSPs)
chr3 (135-226)||(13180678-13180769)
chr3 (135-226)||(13185212-13185303)
chr3 (135-226)||(33758756-33758847)
[»] scaffold0671 (1 HSPs)
scaffold0671 (136-226)||(1213-1303)
[»] chr6 (3 HSPs)
chr6 (136-226)||(21302569-21302659)
chr6 (136-226)||(12638788-12638878)
chr6 (136-226)||(9343645-9343735)
[»] chr5 (1 HSPs)
chr5 (139-226)||(22825819-22825906)
[»] scaffold0065 (1 HSPs)
scaffold0065 (136-226)||(34545-34635)
[»] chr7 (3 HSPs)
chr7 (136-226)||(21369409-21369499)
chr7 (136-226)||(16156232-16156322)
chr7 (138-226)||(22708609-22708697)
[»] scaffold0512 (1 HSPs)
scaffold0512 (136-181)||(1-46)
[»] scaffold0089 (1 HSPs)
scaffold0089 (8-45)||(31958-31995)
[»] scaffold0034 (1 HSPs)
scaffold0034 (134-202)||(84650-84718)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 50681118 - 50680984
Alignment:
Q  1 tcttgagagcaacgttaatgtaaaaagtcaagtatattagaagcttatcagcagggctttcgatgtcaaagtttctgaagaacacattggctctgaagaa 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50681118 tcttgagagcaacgttaatttaaaaagtcaagtatattagaagcttatcagcagggcttttgatgtcaaagtttctgaagaacacattggctctgaagaa 50681019  T
Q  101 tgtgattgcttcatccacaatatcagttctatcta 135  Q
    |||||||||||||||||||||||||||||||||||    
T  50681018 tgtgattgcttcatccacaatatcagttctatcta 50680984  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 37259607 - 37259697
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37259607 tgatgaaggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagttaaggag 37259697  T

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Target: scaffold0320 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 20248 - 20121
Alignment:
Q  8 agcaacgttaatgtaaaaagtcaagtatattagaagcttatcagcagggctttcgatgtcaaagtttctgaagaacacattggctctgaagaatgtgatt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20248 agcagcgttaatgtaaaaagtcaagtatattagaagcttatcagcagggctttcgatgttaaagtttctgaagaacacattggctctgaagaatgtgatt 20149  T
Q  108 gcttcatccacaatatcagttctatcta 135  Q
    ||||||||||||||||||||||||||||    
T  20148 gcttcatccacaatatcagttctatcta 20121  T

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Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 47893614 - 47893748
Alignment:
Q  1 tcttgagagcaacgttaatgtaaaaagtcaagtatattagaagcttatcagcagggctttcgatgtcaaagtttctgaagaacacattggctctgaagaa 100  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||    
T  47893614 tcttgagagcaacattgatgtaaaaagtcaagtatattagaagcttatcagcaggactcttgatatcaaagtttctgaagaacacattggctctgaagaa 47893713  T
Q  101 tgtgattgcttcatccacaatatcagttctatcta 135  Q
    |||||||||||||||||||||||||||||||||||    
T  47893714 tgtgattgcttcatccacaatatcagttctatcta 47893748  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 11474840 - 11474931
Alignment:
Q  135 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474840 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 11474931  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 34454917 - 34455009
Alignment:
Q  134 tatgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||  |||||||||||||||||    
T  34454917 tatgatgagggcataattgtccatgacacaagtgcttcaattcaagggctaggaagaccaatgacaagggcaagggccaagaaagctaaggag 34455009  T

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Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 18775183 - 18775092
Alignment:
Q  135 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18775183 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 18775092  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 18784132 - 18784042
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18784132 tgatgagggcatggttgtccatgacacgaatgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 18784042  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 17465616 - 17465566
Alignment:
Q  176 caagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  17465616 caagggatagaaggaccaatgacaaggtcgaggaccaagaaagctaaggag 17465566  T

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Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 13180769 - 13180678
Alignment:
Q  135 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13180769 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 13180678  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 13185303 - 13185212
Alignment:
Q  135 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13185303 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 13185212  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 33758847 - 33758756
Alignment:
Q  135 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  33758847 atgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgaggaccaagaaagttaaggag 33758756  T

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Target: scaffold0671 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0671
Description:

Target: scaffold0671; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 1213 - 1303
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1213 tgatgagagcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 1303  T

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Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 21302659 - 21302569
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21302659 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggttaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 21302569  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 12638788 - 12638878
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  12638788 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaagggcgaggaccaagaaagctaaggag 12638878  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 9343645 - 9343735
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    |||||||||| |  |||||||||||| |||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  9343645 tgatgagggcgtaattgtccatgacagaagtacttcaattcaagggctaggaggaccaatgacaagggcaaggaccaagaaagctaaggag 9343735  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 22825906 - 22825819
Alignment:
Q  139 tgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22825906 tgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgaggaccaagaaagctaaggag 22825819  T

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Target: scaffold0065 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 34635 - 34545
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  34635 tgatgagggcatggttgtccatgacacaagtgtttcaattcaagggctaggaggaccaatgacaaggtcgaggaccaagaaagttaaggag 34545  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 21369499 - 21369409
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||    
T  21369499 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaataacaagggcgaggaccaagaaagctaaggag 21369409  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 16156232 - 16156322
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    |||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16156232 tgatgagggcacagttgtccatgacacaagcgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagagagctaaggag 16156322  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 22708697 - 22708609
Alignment:
Q  138 atgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaaggtcgagaaccaagaaagctaaggag 226  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||| |||||||    
T  22708697 atgagggcatagttttccatgacacaagtgattcaattcaagggctaggaggaccaatgacaagggcaaggaccaagaaagttaaggag 22708609  T

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Target: scaffold0512 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 46 - 1
Alignment:
Q  136 tgatgagggcatggttgtccatgacacaagtgcttcaattcaaggg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46 tgatgagggcatggttgtccatgacacaagtgcttcaattcaaggg 1  T

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Target: scaffold0089 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 31958 - 31995
Alignment:
Q  8 agcaacgttaatgtaaaaagtcaagtatattagaagct 45  Q
    |||| |||||||||||||||||||||||||||||||||    
T  31958 agcagcgttaatgtaaaaagtcaagtatattagaagct 31995  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 84718 - 84650
Alignment:
Q  134 tatgatgagggcatggttgtccatgacacaagtgcttcaattcaagggctaggaggaccaatgacaagg 202  Q
    ||||||||||||||  ||||||| || ||||||    ||||||||||||||||| ||||||||||||||    
T  84718 tatgatgagggcataattgtccaagatacaagtcaagcaattcaagggctaggaagaccaatgacaagg 84650  T

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