View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1762_low_27 (Length: 237)

Name: NF1762_low_27
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1762_low_27
NF1762_low_27
[»] chr6 (9 HSPs)
chr6 (50-237)||(5889108-5889295)
chr6 (17-237)||(5163618-5163820)
chr6 (50-237)||(5883914-5884101)
chr6 (50-237)||(5853753-5853940)
chr6 (50-237)||(5830812-5830999)
chr6 (46-237)||(5881198-5881389)
chr6 (50-237)||(5761920-5762106)
chr6 (46-237)||(5821480-5821671)
chr6 (120-237)||(2715409-2715530)
[»] scaffold0087 (5 HSPs)
scaffold0087 (46-237)||(40925-41116)
scaffold0087 (50-237)||(13486-13672)
scaffold0087 (58-237)||(30892-31071)
scaffold0087 (57-237)||(20544-20724)
scaffold0087 (50-230)||(34891-35070)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 5889108 - 5889295
Alignment:
Q  50 ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg 149  Q
    ||||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5889108 ttccccacgtatgtagaaggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttattgaaagacaagttcatgtaactaagaaatg 5889207  T
Q  150 tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  5889208 tcaaatttgaaaagcttgttggcattttacccgaaagatggtttcttgacaagtcgagtgattccaacatttccatatgaccaatgtt 5889295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 5163820 - 5163618
Alignment:
Q  17 atgagtggttgtccacaaagtcactcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagt 116  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5163820 atgagtggctgtccacaaagtcattcataactgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagt 5163721  T
Q  117 tgttgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaa 216  Q
    |||||||                  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5163720 tgttgaa------------------aagaaatgtcaaatttgaaaagtttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaa 5163639  T
Q  217 cattttcatatgacaaatgtt 237  Q
    |||||||||||||| ||||||    
T  5163638 cattttcatatgaccaatgtt 5163618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 5884101 - 5883914
Alignment:
Q  50 ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg 149  Q
    ||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  5884101 ttccccacatatgaagaggaatcaaaagtttgtagttgagtgcttagtggaattttgccttctaagttgttgaacgacaggttcatgtaaccaagaaatg 5884002  T
Q  150 tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||    
T  5884001 tcaaatttgaaaagcttgttggcattctacccgaaagatggtttcttgacaagtcaagtgattctaacattttcatatgaccaatgtt 5883914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 5853940 - 5853753
Alignment:
Q  50 ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg 149  Q
    ||||| ||||||| | ||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5853940 ttccccacatatgaataggaatcaaaagtttgtagctgagtgcttattggaattttgccttctaagttgttgaaagacaagttcatgtaactaagagatg 5853841  T
Q  150 tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    | |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||||    
T  5853840 ttaaatttgaaaagcttgttggcattctaccagaaagatggtttcttgacaaatcgagcgattctaacattttcatatgaccaatgtt 5853753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 5830999 - 5830812
Alignment:
Q  50 ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg 149  Q
    ||||| ||||||| | ||| |||||||| ||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| | |||||||||    
T  5830999 ttccccacatatgaataggaatcaaaagtttgtagttgagtgcttactggaattttgccgtctaagttattgaaagacaagttcatgttattaagaaatg 5830900  T
Q  150 tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||    
T  5830899 tcaaatttgaaaagctcgttggcattctaccagaaagatggtttcttgacaagtcgagtgattctaacctttccatatgaccaatgtt 5830812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 5881389 - 5881198
Alignment:
Q  46 actgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaaga 145  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||| | |||||||||||| |||||||| |||||||| |||| ||||||||||| ||||    
T  5881389 actgttccccacatatgcagagggatgaaaagtttgtagttgagtacctagtggaattttcccttctaaattgttgaacgacaggttcatgtaaccaaga 5881290  T
Q  146 aatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    ||||||||| |||||||||||||||||||||||||  | ||||| |||||||||||||| | |||||| |||||||||||||||| ||||||    
T  5881289 aatgtcaaacttgaaaagcttgttggcattttaccgtagagatgatttcttgacaagtccaatgattctaacattttcatatgaccaatgtt 5881198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 5762106 - 5761920
Alignment:
Q  50 ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg 149  Q
    ||||| |||||||  |||||  |||||| |||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  5762106 ttcccaacatatgatgaggggccaaaagtttgtagttgagtgcttatgggaatattgccttctaagttgttgaaa-acaagttcatgtgactaagaaatg 5762008  T
Q  150 tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||  |||||||||||| ||||||    
T  5762007 tcaaatttgaaaagcttgttggcattctacctgaaagatggtttattgacaagtcgagtgattgtaaacttttcatatgaccaatgtt 5761920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 5821671 - 5821480
Alignment:
Q  46 actgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaaga 145  Q
    ||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||||| ||||    
T  5821671 actgttccccacatatgaagatggatcaaaagtttgtagttgagtgcttagtggaattttcccttctaaattgttgaatgacaggttcatgtaaccaaga 5821572  T
Q  146 aatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    ||||||||| |||||||||||||||||||||||||  | ||||| |||||||||||||| | |||||| ||  ||| |||||||| ||||||    
T  5821571 aatgtcaaacttgaaaagcttgttggcattttaccgtagagatgatttcttgacaagtccaatgattctaaactttccatatgaccaatgtt 5821480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 2715409 - 2715530
Alignment:
Q  120 tgaaagacaagttcatgtaactaagaaatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttg----acaagtcgagtgattcca 215  Q
    |||||||||||||||||||||| |  ||||||||||| | |||||||||||||||| |||   ||||||  |||||||    | |||||||| ||||| |    
T  2715409 tgaaagacaagttcatgtaacttatgaatgtcaaattagcaaagcttgttggcattctacaataaagataatttcttgatatataagtcgagcgattcta 2715508  T
Q  216 acattttcatatgacaaatgtt 237  Q
    ||||||||||||||||||||||    
T  2715509 acattttcatatgacaaatgtt 2715530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 41116 - 40925
Alignment:
Q  46 actgttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaaga 145  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  41116 actgttcccgacatatgtagagggatcaaaagattgtagttgagtgcttagtggaattttaccttctaagttgttgaacgacaagttcatgtaactaaga 41017  T
Q  146 aatgtcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    ||||||||||  |||||||||| ||||||| | || ||||||||||||||||||||||| |||||||| ||  ||| |||||||| ||||||    
T  41016 aatgtcaaatacgaaaagcttggtggcattctcccagaaagatggtttcttgacaagtcaagtgattctaatgtttccatatgaccaatgtt 40925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 13672 - 13486
Alignment:
Q  50 ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg 149  Q
    ||||| |||||||  |||||  |||||| |||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  13672 ttcccaacatatgatgaggggccaaaagtttgtagttgagtgcttatgggaatattgccttctaagttgttgaaa-acaagttcatgtgactaagaaatg 13574  T
Q  150 tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||  ||| |||||||| ||||||    
T  13573 tcaaatttgaaaagcttgttggcattctacctgaaagatggtttcttgacaagtcgagtgattgtaaactttccatatgaccaatgtt 13486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 31071 - 30892
Alignment:
Q  58 atatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaattt 157  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31071 atatgtagatggatcaaaagattgtagttgagtgcttagtggaatttttccttctaagttgttgaaagacaagtccatgtaactaagaaatgtcaaattt 30972  T
Q  158 gaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    |  ||||| ||||||||| ||||||||| ||| |||||||| ||||| |||||||| ||  ||| |||||||| ||||||    
T  30971 gttaagctcgttggcattctacctgaaatatgttttcttgataagtctagtgattctaatctttccatatgaccaatgtt 30892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 20724 - 20544
Alignment:
Q  57 catatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatgtcaaatt 156  Q
    |||||| ||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20724 catatgtagatggaccaaaagattgtagttgagtgcatagtggaatttttccttctaagttgttgaaagacaagtccatgtaactaagaaatgtcaaatt 20625  T
Q  157 tgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgtt 237  Q
    ||| ||||| || |||||| |||| |||| ||| |||||||| ||||| |||||||| ||| ||| |||||||| ||||||    
T  20624 tgagaagctcgtcggcattctaccagaaatatgatttcttgagaagtcaagtgattctaacctttccatatgaccaatgtt 20544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 35070 - 34891
Alignment:
Q  50 ttcccgacatatgcagagggatcaaaagattgtagttgagtgcttagtggaattttgccttctaagttgttgaaagacaagttcatgtaactaagaaatg 149  Q
    ||||| ||||||| | ||| |||||||  ||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||| | ||||| |||    
T  35070 ttccccacatatgaataggaatcaaaat-ttgtagttgagtgcttactggaattttgtcgtctaagttattgaaagacaagttcatgttattaagagatg 34972  T
Q  150 tcaaatttgaaaagcttgttggcattttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgac 230  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  34971 tcaaatttgaaaagctcgttggcattctaccagaaagatggtttcttgacaagtcgagtgattctaacctttccatatgac 34891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University