View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1762_low_28 (Length: 237)

Name: NF1762_low_28
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1762_low_28
NF1762_low_28
[»] chr2 (1 HSPs)
chr2 (18-83)||(35058847-35058912)
[»] chr4 (1 HSPs)
chr4 (18-74)||(22524722-22524778)
[»] chr8 (1 HSPs)
chr8 (18-75)||(38714424-38714481)
[»] chr3 (1 HSPs)
chr3 (18-75)||(11653528-11653585)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 35058847 - 35058912
Alignment:
Q  18 aaccataaataaagaacttaaattgctttctctaaaagcagtactcatgaataataattcatatct 83  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  35058847 aaccataaataaagaacttaaattgctttctctaaaagtagtactcatgaataataattcaaatct 35058912  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 22524778 - 22524722
Alignment:
Q  18 aaccataaataaagaacttaaattgctttctctaaaagcagtactcatgaataataa 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22524778 aaccataaataaagaacttaaattgctttctctaaaagcagtactcatgaataataa 22524722  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 38714424 - 38714481
Alignment:
Q  18 aaccataaataaagaacttaaattgctttctctaaaagcagtactcatgaataataat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  38714424 aaccataaataaagaacttaaattgctttctctaaaagcagtattcatgattaataat 38714481  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 11653528 - 11653585
Alignment:
Q  18 aaccataaataaagaacttaaattgctttctctaaaagcagtactcatgaataataat 75  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11653528 aaccatgaataaagaacttaaattgctttctctaaaagcagtactcatgcataataat 11653585  T

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