View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_29 (Length: 235)
Name: NF1762_low_29
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 38041202 - 38040986
Alignment:
| Q |
4 |
tttgtgtgacaacttcgtgaactacgtttgcaaacatatgtattttaagtttaaattaagtgatgttatatgcgtatcagcagacagcagcatgttataa |
103 |
Q |
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| T |
38041202 |
tttgtgtgacaacttcgtgaactacgtttgcaaacatatgtattttaagttcaaattaagtgatgttatatgcgtatcaacagacaacagcatgttataa |
38041103 |
T |
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| Q |
104 |
aagacatgataatggnnnnnnnncaaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgtttgagcaataatact |
203 |
Q |
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| T |
38041102 |
aagacatgataatggttttttttcaaagcaaaagagattaatattaattttttttcataggagattaatactattaaaactttgtttgagcaataatact |
38041003 |
T |
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| Q |
204 |
attaaaacttaacaagt |
220 |
Q |
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| T |
38041002 |
attaaaacttaacaagt |
38040986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 31841592 - 31841404
Alignment:
| Q |
26 |
tacgtttgcaaacatatgtattttaagtttaaa-ttaagtgatgttatatgcgtatcagcagacagcagcatgttataaaagacatgataatggnnnnnn |
124 |
Q |
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| T |
31841592 |
tacgtttgcaaatatatgtaaattaagttcaaaattaagtgatgtt-tatgcgtatcagtag-------catgttataaaagacatgataatggtttttt |
31841501 |
T |
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| Q |
125 |
nn--caaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgtttgagcaataatactattaaaacttaacaagt |
220 |
Q |
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| T |
31841500 |
ttttcaaagcaaaagagattaatattaagtttttt-cagaggagattaatattattaaaactttgtttgagcaaaaatactattaaaacttaacaagt |
31841404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 31837432 - 31837371
Alignment:
| Q |
159 |
cagaggagattaatactattaaaactttgtttgagcaataatactattaaaacttaacaagt |
220 |
Q |
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| T |
31837432 |
cagaggagattaatactattacaactttgtttgagcaaaaatactattaaaacttaacaagt |
31837371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 31837554 - 31837474
Alignment:
| Q |
1 |
aaatttgtgtgacaacttcgtgaactacgtttgcaaacatatgtattttaagtt-taaattaagtgatgttatatgcgtat |
80 |
Q |
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| T |
31837554 |
aaatttgtgagatcacttcgtgaactacgtttgcaaatatatttattttaagttcaaaattaagtgatgttacatgcgtat |
31837474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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