View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1762_low_3 (Length: 447)
Name: NF1762_low_3
Description: NF1762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1762_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 4293023 - 4292793
Alignment:
| Q |
17 |
accctttcaatgccatgaattttattagtatcataacaaaaagaggaagctcnnnnnnncatgagatcggtctgatccaaatgtttttcatgtttttagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4293023 |
accctttcaatgccatgaattttattagtatcataacaaaaagaggaagctcaaaaaaacatgagatcggtctgatccaaatgtttttcatgtttttagt |
4292924 |
T |
|
| Q |
117 |
ctttattcctctttttatttcctccgcctctataagttataccatcacatattataatttgagggaaaatgaaagaaagactcctactaaagtttctcct |
216 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |
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| T |
4292923 |
ctttattcctcttttcatttcctccgcctctataagttataccatcacatattataatttgagggaaaataaaagaaagactcttactaaaatttctcct |
4292824 |
T |
|
| Q |
217 |
taatatagcttaatagagctagtgaattggt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
4292823 |
taatatagcttaatagagctagtgaattggt |
4292793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 292 - 442
Target Start/End: Complemental strand, 4292748 - 4292598
Alignment:
| Q |
292 |
ccacgagagaaattctagattttgagtgtgaattgataaacacaaaaacattttaaaatccacacacccaaaaatcaagatcacatgagaaattctagat |
391 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4292748 |
ccacgagagaaattagagattttgagcgcgaattgataaacacaaaaacattttaaaatccacacacccaaaaatcaagaccacatgagaaattctagat |
4292649 |
T |
|
| Q |
392 |
gttaacatcaagttgatgcgatggcaaatttttattgagtagtattattta |
442 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
4292648 |
gttaacatcaagttgatgcgatgacaaatttttattgagtagtgttattta |
4292598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 4535612 - 4535751
Alignment:
| Q |
106 |
atgtttttagtctttattcctctttttatttcctccgcctctataagttataccatcacatattataatttgagggaaaatgaaagaaagactcctacta |
205 |
Q |
| |
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||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || |
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| T |
4535612 |
atgtttttagtctttcttcctcttttcttttcctccaccagtataagttataccatcacatattataatttgagagaaaatgaaagaaagactcttatta |
4535711 |
T |
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| Q |
206 |
aagtttctccttaatatagcttaatagagctagtgaattg |
245 |
Q |
| |
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|||||||||| |||||||||| |||||| ||||||||||| |
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| T |
4535712 |
aagtttctccataatatagctgaatagatctagtgaattg |
4535751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 106 - 247
Target Start/End: Original strand, 4525863 - 4526004
Alignment:
| Q |
106 |
atgtttttagtctttattcctctttttatttcctccgcctctataagttataccatcacatattataatttgagggaaaatgaaagaaagactcctacta |
205 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||| | |||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||| |
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| T |
4525863 |
atgtttttagtctttcttcctctcttcttttcctccgcatgtataagttataccatcacatattataatatgagggaaaatataagaaatactcttacta |
4525962 |
T |
|
| Q |
206 |
aagtttctccttaatatagcttaatagagctagtgaattggt |
247 |
Q |
| |
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||||||||||||||||||| | |||||| | ||||||||||| |
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|
| T |
4525963 |
aagtttctccttaatatagttgaatagatccagtgaattggt |
4526004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 4527738 - 4527597
Alignment:
| Q |
106 |
atgtttttagtctttattcctctttttatttcctccgcctctataagttataccatcacatattataatttgagggaaaatgaaagaaagactcctacta |
205 |
Q |
| |
|
||||||||||||||| | |||||||| | || ||| | | || ||||||||| ||||||||||||||||| || |||| |||||||| |||| ||||| |
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| T |
4527738 |
atgtttttagtctttctccctcttttcttatcatccacttgtagaagttatacgatcacatattataatttaagaaaaaaagaaagaaaaactcttacta |
4527639 |
T |
|
| Q |
206 |
aagtttctccttaatatagcttaatagagctagtgaattggt |
247 |
Q |
| |
|
|| |||||||||||||||||| |||||| |||||||||||| |
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| T |
4527638 |
aattttctccttaatatagctaaatagatatagtgaattggt |
4527597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 396
Target Start/End: Original strand, 4535794 - 4535894
Alignment:
| Q |
297 |
agagaaattctagattttgagtgtgaattgat-aaacacaaaaacattttaaaatccacacacccaaaaatcaagatcacatgagaaattctagatgtta |
395 |
Q |
| |
|
|||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||| | ||||||||| | || |||||||||||||||| ||| |
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| T |
4535794 |
agagaaattctagattttaagcgtgaattggttaaacacaaaaacattttaaaatccacacatcaaaaaatcaataccaaatgagaaattctagatttta |
4535893 |
T |
|
| Q |
396 |
a |
396 |
Q |
| |
|
| |
|
|
| T |
4535894 |
a |
4535894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 4537211 - 4537135
Alignment:
| Q |
292 |
ccacgagagaaattctagattttgagtgtgaattgataaacacaaaaacattttaaaatccacacacccaaaaatcaa |
369 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | || ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4537211 |
ccacgagagaaattctagattttgaatgtgaattggttaa-acacaaacattttaaaatccacacacccaaaaatcaa |
4537135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 19411798 - 19411657
Alignment:
| Q |
106 |
atgtttttagtctttattcctctttttatttcctccgcctctataagttataccatcacatattataatttgagggaaaatgaaagaaagactcctacta |
205 |
Q |
| |
|
||||||||| ||||| |||||||||| |||| ||| ||| |||||||||| ||| |||||| |||||||| |||||||| | |||||| |||| | ||| |
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|
| T |
19411798 |
atgtttttaatctttcttcctcttttcttttcatccacctgtataagttatgccaccacatagtataattttagggaaaaaggaagaaaaactcatccta |
19411699 |
T |
|
| Q |
206 |
aagtttctccttaatatagcttaatagagctagtgaattggt |
247 |
Q |
| |
|
| ||| |||||||||||||||||||| |||||||| |||| |
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| T |
19411698 |
attttttcccttaatatagcttaatagatctagtgaaatggt |
19411657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 396
Target Start/End: Original strand, 4526041 - 4526143
Alignment:
| Q |
292 |
ccacgagagaaattctagattttgagtgtgaattgataa-acacaaaaacattttaaaatccacacacccaaaaatcaagatcacatgagaaattctaga |
390 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| | | |||||| |||||||||||||||||||||||||||||||| | |||||||||| |||| |
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|
| T |
4526041 |
ccacgagagaaattctagattttgagcgtcaattggttagacacaa---cattttaaaatccacacacccaaaaatcaagaccggatgagaaattataga |
4526137 |
T |
|
| Q |
391 |
tgttaa |
396 |
Q |
| |
|
| |||| |
|
|
| T |
4526138 |
ttttaa |
4526143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 396
Target Start/End: Complemental strand, 4527555 - 4527450
Alignment:
| Q |
292 |
ccacgagagaaattctagattttgagtgtgaattgat-aaacacaaaaacattttaaaatccacacacccaaaaatcaagatcacatgagaaattctaga |
390 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| | |||||||||| ||||||||||| ||||||| |||||||| | |||| || |||||||||| |
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|
| T |
4527555 |
ccaccagagaaattctagattttgagcgtgaattggttaaacacaaaaccattttaaaataaacacaccttaaaatcaataccacaagaaaaattctaga |
4527456 |
T |
|
| Q |
391 |
tgttaa |
396 |
Q |
| |
|
| |||| |
|
|
| T |
4527455 |
ttttaa |
4527450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 19411606 - 19411514
Alignment:
| Q |
299 |
agaaattctagattttgagtgtgaattgat-aaacacaaaaacattttaaaatccacacacccaaaaatcaagatcacatgagaaattctaga |
390 |
Q |
| |
|
|||||||| ||||||||||||||||| | | ||||||||| |||| |||||||||||||| ||||||| || | |||| |||||||| |||| |
|
|
| T |
19411606 |
agaaattccagattttgagtgtgaatgggttaaacacaaatacatattaaaatccacacatccaaaaaataataccacaagagaaattgtaga |
19411514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 4527819 - 4527767
Alignment:
| Q |
17 |
accctttcaatgccatgaattttattagtatcataacaaaa-agaggaagctc |
68 |
Q |
| |
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|||||||||||| ||||||||||| ||||| |||||||||| |||||||||| |
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|
| T |
4527819 |
accctttcaatgacatgaattttactagtaccataacaaaagggaggaagctc |
4527767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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